Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq370 138 1e-27 >seq370 Length=3208305 Score = 138 bits (152), Expect = 1e-27 Identities = 537/827 (65%), Gaps = 19/827 (2%) Strand=Plus/Plus Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 ||| ||||| | |||||| ||| ||||| || ||||| |||||| || ||||| Sbjct 1475284 GGTATATTCGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTG 1475343 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 ||| ||||| | || || | ||| ||||| ||||| ||||| || ||||| | || Sbjct 1475344 ATTGGATTTTGCATTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTG 1475403 Query 110448 TGACTTGAGA-ATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 | ||| | || || ||||| ||| || | || ||| || | | | || Sbjct 1475404 -GCTTTGTAATATAGCAAACCATAAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTT 1475462 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 | || || || || || || || | |||||||| | || | ||| | ||| | Sbjct 1475463 CTTCTTCATATTTAGTATATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACC-T 1475521 Query 110567 TCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 | || | ||||| | | | ||||||| | || | ||| |||||||| || Sbjct 1475522 GGACATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAA 1475581 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || ||||||| ||| | || | || | || || | ||||| | || ||| Sbjct 1475582 AGATCAGGAACCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGG 1475641 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || | || || ||||| || | ||||| || ||||||||||| | ||| ||||| Sbjct 1475642 TTCTTTCTTAAATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCA 1475701 Query 110746 ATGGATCCCTTACGACGACC--CGCCTGGTTA-ACATAGCGTGCTGTGGCATTGAAGACC 110802 | ||||||||||| || | ||| | | ||||| | ||| || |||| || || Sbjct 1475702 AACGATCCCTTACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACT 1475761 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 || | |||||| | | |||| ||| ||||| ||||| ||||| || || | Sbjct 1475762 CTTAACATAGGTACTAAACCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGT 1475821 Query 110863 GCACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 | | || || || | ||| | ||||||||| || || ||||||||| ||||| Sbjct 1475822 CCTCTTATATCTTGTAC-TGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACA 1475880 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATTAGAAAGC 110980 | | | || || || ||||||| ||||| |||||||| || ||| || ||||| | Sbjct 1475881 TTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAA-C 1475939 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 |||||||||| || || | || ||||| | ||| || | |||||| || ||||| | | Sbjct 1475940 AAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGT-A 1475998 Query 111041 ACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA---CATCTTTACCG 111096 | | | | || ||||| | ||||| || || || || ||||| || Sbjct 1475999 AAATATTTCTGAGACATTAAATGATATGTTTCTAGAGCTTTATCTATGTCATCTATA--- 1476055 Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGAT 111143 || |||||||| | ||||| ||| || | || |||||| |||| || Sbjct 1476056 TGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAAT 1476102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973261261600