Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq370 102 1e-16 >seq370 Length=3208305 Score = 102 bits (112), Expect = 1e-16 Identities = 438/687 (64%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 |||||| ||| || || | || || ||||||||| ||||||| || || | ||||| Sbjct 1474702 TCTTCTATAATAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTG 1474761 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || || || || |||||||| ||||| | || | ||| | | ||| | || Sbjct 1474762 TGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACG 1474821 Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACAT 106101 ||| | || | ||||||| || || ||| | || | | | |||||| Sbjct 1474822 GATTTTAGCTTTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACAT 1474881 Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161 ||||||||| | | |||||| | ||| || | | | | ||||| | || || Sbjct 1474882 ATCAAATTGTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATG 1474941 Query 106162 GGCTTCAGCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 106220 | |||||||||| ||| | || | | || | |||||| |||||||| || | Sbjct 1474942 TATTGAAGCCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTC 1475000 Query 106221 GAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACAT 106280 ||||| || || || |||| || ||| ||| || | | || |||||| || Sbjct 1475001 TTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTAT 1475060 Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG 106340 | || | ||||||||||| | ||||||||| || |||| ||||||| || || Sbjct 1475061 CTGCTAATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTT 1475120 Query 106341 TCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 106400 | || |||||| ||||||| || || | | | || |||| | |||| ||| || | Sbjct 1475121 CTTTGACTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGG 1475180 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC--ATTGACATACTTTGG 106458 | ||||||| | |||| | ||| || | | | | | | || ||| | || Sbjct 1475181 TAATTTCATATAACTTTTTAAAATTGAA--TTCTTTTTTTTCCAAATCTACAAATTTACA 1475238 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 | || || ||||||||||| || ||||| ||||| | || || || | ||| Sbjct 1475239 TAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAAT 1475298 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 ||| ||| ||||| || ||||| || |||||||| || || || ||| || Sbjct 1475299 TTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATT 1475358 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGG 106605 || | ||| || || ||||| || || Sbjct 1475359 ACAAGAATCTTTATATAGCATATATGG 1475385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978056589280