Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq358 140 4e-28 seq360 89.7 7e-13 >seq358 Length=791303 Score = 140 bits (154), Expect = 4e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 126924 GGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACAT 126983 ||||||| | ||||| ||||| ||||| || |||||||| ||||| | | |||||| Sbjct 579351 GGAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACATATTATCAAAGATTAAAACAT 579410 Query 126984 ATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCA 127042 |||||| |||||||||| ||||| |||||| || | | |||| | |||||| | || Sbjct 579411 ATGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACA 579469 Query 127043 ACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||||| || | || || |||||| |||||||||||||||||||||| |||||| Sbjct 579470 ACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTG 579529 Query 127103 TATTTTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAATGTTT 127148 ||| | |||||| | || || | ||||| |||||| | ||| Sbjct 579530 TATGATATCACATGGATCTGCAAAAATGTTAAAAGAAAGATTATTT 579575 >seq360 Length=1059361 Score = 89.7 bits (98), Expect = 7e-13 Identities = 181/260 (70%), Gaps = 19/260 (7%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTTT-ACGCC 104854 |||||||||||||| || ||| | ||||| | || ||||| ||| || ||| | | Sbjct 670438 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTTTTAAGAG 670494 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAAC---TTGTTA 104911 | ||| || ||||||| | ||| | || | ||| ||||||| ||| |||||| Sbjct 670495 GA-ATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGTTGTTA 670553 Query 104912 AATGAAATTGGTGTTAAAG-TATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTG 104970 ||| | | || ||| | ||||| | | ||||||| | | | ||||||||| | | Sbjct 670554 AATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAG 670609 Query 104971 TGGATTTCACTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAG 105027 ||| |||| | ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 670610 AAAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAG 670666 Query 105028 ACATGCTGGAGCTCAATATA 105047 |||| || ||| |||||| Sbjct 670667 ACATTTCGGTGCTGAATATA 670686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658400138425120