Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq370 590 7e-164 >seq370 Length=3208305 Score = 590 bits (654), Expect = 7e-164 Identities = 1156/1703 (68%), Gaps = 46/1703 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || ||| || || || |||||||| | |||| | |||| || || Sbjct 1474474 CTGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTC 1474533 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGA 47239 |||||| ||||| || | | ||| | ||| ||||| | | | | || ||||||| Sbjct 1474534 CCATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299 ||| || |||| | || | ||| | || | ||| | || ||| ||| Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTTTCATGTCTTCATCCCATAAACCTCTGTCAAATAA 1474653 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 |||||| | ||| |||||||||| |||||||||| || ||||| | ||| Sbjct 1474654 ATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATA 1474713 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 |||||||| ||||||||||| | |||||||| ||||| | |||||| | ||| ||||| Sbjct 1474714 AATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGC 1474773 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 || ||||| | ||| | |||||| ||||||| |||| ||| | || | Sbjct 1474774 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTT 1474833 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGG-AAC---AACATTCCAAAAATCATATTGAA 47535 | |||||||||| || || | ||| | ||||||| | |||| |||| | Sbjct 1474834 TAATTCATCCCAATCCCAAT-ATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTA 1474892 Query 47536 GAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGA 47595 || |||| ||| ||| || | ||| | || ||| || || | || | ||| | Sbjct 1474893 ATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCA 1474952 Query 47596 GTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 |||| || || | ||| || ||| |||||| || |||||||||||| || | || | Sbjct 1474953 ATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCA- 1475009 Query 47654 ATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 |||| || || | |||||| | ||||| ||||||||||| |||| Sbjct 1475010 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1475069 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 ||||||||||||||||||| || ||||| | ||||||| | |||||| | || Sbjct 1475070 CTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTG 1475129 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | ||| | ||||||||||||| || | |||||| Sbjct 1475130 GATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCAT 1475189 Query 47833 TTAATTTATTAAAATCAAACTTGTTATTTATAACAAACCTATTAAGT--------GCTAT 47884 ||| || ||||||| || || || ||| | |||| ||| || | ||||| Sbjct 1475190 ATAACTTTTTAAAATTGAA-TTCTTTTTTTTC-CAAATCTACAAATTTACATAAAGCTAT 1475247 Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 |||||| | |||||||||||| || |||| ||| ||||||| || |||||| ||| Sbjct 1475248 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1475307 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG--TTACATG 48000 || |||| |||||| |||||||||||||||| ||||| ||| ||| ||||| | Sbjct 1475308 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATT----TTGCATTACAAG 1475363 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 || || || |||||| | ||| ||| |||||||| || || | |||| || Sbjct 1475364 AATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACC 1475423 Query 48061 AAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT---TATTATCATGTTCGTATTTAGTA 48116 | | | || | ||| | ||| | | | | |||| || | ||| ||||||||| Sbjct 1475424 ATAAA-TCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTA 1475479 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || |||||||| || || | | | ||| || ||||||||||| |||||| Sbjct 1475480 TATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACAC 1475539 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || |||| ||||| | || | ||| ||||| ||||||| | ||| || | ||| | | Sbjct 1475540 ATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACA 1475599 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| | | ||||| |||||| || ||| ||| || | | || | | Sbjct 1475600 GCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAA 1475659 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | |||||| | |||||||||||| | ||| | || | || ||||| Sbjct 1475660 AATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTT 1475719 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| ||||||| ||| ||||||||||||| || || | | Sbjct 1475720 CCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAA 1475779 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAAC---TTCCACTAGCTCTTATATTACTA 48473 ||||| ||||| |||||||| || ||||||| || | ||||||||| Sbjct 1475780 CCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTC---CTCTTATATCTTGT 1475836 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | || | ||| ||||| ||||| ||||| |||| |||||| |||| || || ||| Sbjct 1475837 ACTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCA 1475896 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 |||| ||||| ||| ||| || |||| ||| | |||||| ||||||||| || Sbjct 1475897 AAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAACAAGAAGACATTTGTGGT 1475956 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 |||||||||||||| ||||| |||| |||||| |||| |||||| || | Sbjct 1475957 CTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATT 1476016 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || | ||||||||| | | | |||||| || | ||||||||| ||||| || | | Sbjct 1476017 AAATGATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTC 1476076 Query 48714 ATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTT 48773 ||||| | || |||||||||||||| |||||| ||||| || || | ||| ||| || Sbjct 1476077 ATTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTT 1476136 Query 48774 TCCAATGTTTTAAAACCAAAATA 48796 ||||| |||||||| |||||||| Sbjct 1476137 TCCAACGTTTTAAATCCAAAATA 1476159 Score = 315 bits (348), Expect = 8e-81 Identities = 623/908 (69%), Gaps = 33/908 (4%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||||||||| || || |||||||| ||||| || || |||||||| | Sbjct 164173 CATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTG 164232 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| || | ||||| ||| |||||||||||| || | ||||| | |||| Sbjct 164233 AAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCC 164292 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833 ||| |||||||| | ||||| || ||||||| |||||| ||| | | | Sbjct 164293 TAAACATTCTAATAAT---CTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGA 164349 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATC---TGTAAGAAATTCTTGTTCTATATT 18890 ||||||||||||||| | | |||| | || | ||| | || ||| || | | Sbjct 164350 ATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGAT-CTT--TCAACTTC 164406 Query 18891 TACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT- 18949 ||| || ||| | ||| | || | | ||| | | || ||| || | Sbjct 164407 TACAGCTTCTTTAACGATATTTTGTACCATTTGTTC--TGGAAGTTTATT----ATCTAA 164460 Query 18950 TAAAC-----ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || || || |||||| ||||| ||| || |||||||| || ||||| Sbjct 164461 TAAACTATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTC 164520 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCA 19062 |||| |||||| ||||| | | | | | || ||| | ||||| || || | | | Sbjct 164521 ATTACTAAATGTCAAACCGTGTA--ATTTATTTTGTTTCTTAAACCAAAAAATTGCACAA 164578 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| || ||||| ||||| || |||| |||||| | |||||| || || Sbjct 164579 AAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCA-AA 164637 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | | || | ||| || ||||||||| |||||| || || |||||||| || Sbjct 164638 CGA--ATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGG 164695 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || | ||||||| || ||||| || | | || | | |||||||| ||| ||| Sbjct 164696 ATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCA 164755 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || |||||||| || ||||||||||||||||||||| ||| || ||||| ||||| Sbjct 164756 ATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAAT 164815 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAAC 19361 | | ||||| ||||| || || || || |||| ||| | | |||||||||| || Sbjct 164816 TTTTTAGCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATAC 164874 Query 19362 TATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 ||| |||||||| ||||||||||||||||| ||||| || ||||||||||| |||| | Sbjct 164875 TATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTC 164934 Query 19422 GGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 | ||| | | |||| || | ||| |||||||||| | |||||| |||||||||| Sbjct 164935 ATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAA 164994 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 |||||| || ||||| || || | | ||| | |||| ||||| ||| ||| ||| | Sbjct 164995 AGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGT 165054 Query 19542 AAATCTAT 19549 ||||| || Sbjct 165055 AAATCGAT 165062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106186194080