Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq370 379 1e-100 >seq370 Length=3208305 Score = 379 bits (420), Expect = 1e-100 Identities = 1039/1555 (67%), Gaps = 86/1555 (6%) Strand=Plus/Plus Query 25012 AATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGA--AGTGAATGGTTCAAAA 25069 || |||||||||| ||||||||||| | |||| | | | ||| |||||||||| Sbjct 1474681 AAAAAATTCTCCACTTAAAACTCTTCTA--TAATAAATATTACTAGTATATGGTTCAAAG 1474738 Query 25070 CATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGC 25129 ||||||| ||||||| ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 1474739 GATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAAT 1474798 Query 25130 GAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAAT---TA 25186 || ||||| ||||||| |||| || | |||||||| ||||||||| ||| | Sbjct 1474799 GAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCCCAATCCCAATATTTG 1474858 Query 25187 TTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCA---CTTGCTGCA 25243 ||||| |||| || | || || ||| ||||||||||| | || ||||||| | Sbjct 1474859 TTATC-AACTT--TAGCATTC-CACATA--TCAAATTGTAATATACCTTGGCTTGCTGGA 1474912 Query 25244 GGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCT 25303 ||||| ||| | |||| || | | || |||| || || ||| Sbjct 1474913 CTTCCTTGAT---AAGATTCATATGGTCCATGTATTGAAGCCAATTCAACAGACATTTCT 1474969 Query 25304 AACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCA 25363 || ||||||||||||||| ||||||| || ||| || || || ||||| | || Sbjct 1474970 AAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA----TT--CTTTTGCAGCA 1475023 Query 25364 TCGAAAGCA-----ATTTCC-ATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAAT 25417 || | || || || | ||| || |||||||||||||| ||||| || | Sbjct 1475024 TCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATA 1475083 Query 25418 CCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTA 25477 |||| || | |||| || ||||| | | | | |||| |||||| ||||| | Sbjct 1475084 CCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCTT 1475143 Query 25478 TCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCA--ACTCAATAA 25535 || || | ||||||| ||| || | || |||| ||| |||| | ||| ||| Sbjct 1475144 TCTATAATTTTATCTAAATTTCTTGTAATAAT-TTTG-GTAATTTCATATAACTTTTTAA 1475201 Query 25536 AGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATG 25595 | | || | | ||| | || | |||||||||| ||||||| || |||| Sbjct 1475202 AATTGAATT---------CTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATG 1475252 Query 25596 CTAAATTACAAACAGCTTGTTCTTTCCCGTCAGA-ATATTCATTGATCTCGATACATAAG 25654 | |||||||| ||||| ||| | | | || |||||| | || || ||||||| Sbjct 1475253 CCAAATTACATACAGCAACTTCAT-CAGGAGAGGTATATTCGATAATTTCACAACATAAG 1475311 Query 25655 TTGCTAGATTTGAT--TACTCCATAATTCTTTTGATT--ATTGCATGTATTGACAATA-T 25709 || ||| |||| || ||| ||| |||| || ||||| ||| || ||| |||| | | Sbjct 1475312 TTACTACATTTAATAGTAC-CCA-AATTTTTCTGATTGGATTT--TGCATT-ACAAGAAT 1475366 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAA 25769 |||||||| | |||||| ||||||||| ||||| | ||| || ||| | Sbjct 1475367 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1475426 Query 25770 GTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTT 25829 ||| || ||| | ||| || |||| | | ||| | | || Sbjct 1475427 AATCTTGAGCAAGAACTGTTTTTT-----TTCCCAT-------ATTTTCTTCTTCATATT 1475474 Query 25830 CAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATAT 25889 | | || || | | || ||| || |||| | || | || | | || Sbjct 1475475 TAGTATATAATTTTTCAAATTCTTCACCCCAA-GTTTCACTTAAACCTGGACATTCAT-- 1475531 Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||||| | ||| ||||| ||||| | |||| ||| |||||| | ||| |||| Sbjct 1475532 TTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAA 1475591 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 ||| | |||||||||||||||| ||||| | |||||||||||| || |||||| ||| Sbjct 1475592 CCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTA 1475651 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 |||||| || ||||| |||||||| ||||||||||| | ||| | |||||| || | Sbjct 1475652 AATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCT 1475711 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | | ||||||||||||||||||||| ||||||||||| ||||| |||||| | ||||| | Sbjct 1475712 TACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAG 1475771 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTAATA 26188 | ||||| ||| | || | ||| || || | ||| | | || |||| ||| ||| Sbjct 1475772 GTACTAAACCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTC-CTCTTATA 1475830 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACT 26248 || || | | ||| || || || || ||| ||| ||||| | | | Sbjct 1475831 TCTTGTACTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGC 1475890 Query 26249 GTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAAT 26308 || || ||||| |||| || ||| |||||||| ||| || ||||||||||| | | Sbjct 1475891 GTTTCAAAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAACAAGAAGACATT 1475950 Query 26309 TGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC- 26367 || | | |||||||||||||| ||||| || || ||||| ||| ||||| ||| Sbjct 1475951 TGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATAT--TTCT 1476008 Query 26368 ---AC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423 || | ||| || ||| ||||| ||| ||| ||| || | | || | ||| Sbjct 1476009 GAGACATTAAA--TG-ATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAA 1476065 Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAA 26483 ||| ||| | | | || |||||||| |||||| | ||||| | || ||| Sbjct 1476066 TAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAATAATTTTATTAT--TAATACGTAA 1476123 Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCT 26538 | ||||||||| |||| || ||||| |||||||||||||||| ||| ||||| || Sbjct 1476124 T-AAATAAGATCTTTCCAACGTTTTAAATCCAAAATAATCATAATTAAAATCCCT 1476177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038852779900