Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq364 118 1e-21 >seq364 Length=1300438 Score = 118 bits (130), Expect = 1e-21 Identities = 476/738 (64%), Gaps = 19/738 (3%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 ||||||||||||||| | || | |||||| | ||| | ||||||| | |||||||| Sbjct 606924 AATAACAAAATCATCTGCCTCATTTTGTTGCAACATAAGATACATAGCATATACATAATC 606865 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTT 47915 | ||||| ||||| || | | || ||| | ||| |||| | |||| | || || Sbjct 606864 CTTAGCATGGCCCCAATCTCTATATGTATCTATATTACCTA-AGATAATGGATGTTTCTA 606806 Query 47916 ACCTTCAGAGATTGCTTTTAATGC-TCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || || | || ||| | ||| ||||| || | || ||||| ||||| || | Sbjct 606805 ATTTTTTTTGAATTTTTGCAATACCTCTAGTAATTTTTCTTGTAACAAACGTTTCTCCTC 606746 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCAC 48034 ||||||| |||||||||||| | ||||||| || | |||| |||||||| | Sbjct 606745 TTCTTGGACTTTCATGATTAAATAAAATACCATTAATACAAAACATATTATATGATTCTC 606686 Query 48035 GATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGAT 48094 ||| || || || | | |||| | |||||| | ||||||| || ||||| Sbjct 606685 TATAATTTATTGTAATATAATGTGCATATAATTTTGCTATGGCATAAGGGGATACTGGAT 606626 Query 48095 AGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGG 48154 | || || || | || | || || ||| || || ||| | | |||| || | Sbjct 606625 AAAATGGGGTATTTTCATTTTGAATAGAACATTGAACTTTTCCAAATAATTCAGATGTTG 606566 Query 48155 ATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTC 48214 |||| | ||| | || ||| || | | | | | | | || | | || Sbjct 606565 ATGCATTATAAAATTTAA---TATTTTTAACTTTTGATATTCTTATTCCTTCTAATATTC 606509 Query 48215 TCAGGGTGCCTATGGCATCTG--TCTGACCAGTATACTCGGGCATCTCAAACGAAACCTT 48272 | | || |||| ||| || |||| |||||||| ||||| ||||| || || Sbjct 606508 TTAATGTACCTAAAGCAGTTGCTTCTG--TTGTATACTCAGGCATTTCAAAACTTACTTT 606451 Query 48273 TACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGT-TGAACCTGCTGAATAACCC 48331 ||||||||| || || | | ||||| || |||| ||| | | | | ||| Sbjct 606450 TACATGACTTTGCGCAGCTAAGTTATATATTTCATTCGGTCTTATTTCACATATTAATGA 606391 Query 48332 TCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATAAATGT 48391 || || ||| || || ||| ||||||||||| || |||| | ||| | |||| Sbjct 606390 ACA-TATATTACTACTATCAAGTAAATCTCCATAATGTAAAATTAACTTATCGAATATGT 606332 Query 48392 GATCAATTCTATGTGTATTAATTAAAGAAGCCCGACG---GACAATACCATGAACCTCAT 48448 ||||||| | | ||| ||| |||||| | ||| | | |||||| || | || Sbjct 606331 GATCAATCCGTTTTGTGTTA---AAAGAACTACAACGTCTTATCACACCATGCACATGAT 606275 Query 48449 ACCCCTTTTC-AAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTG 48507 | ||||| || || || || ||| |||||||||||||||||||| || || | Sbjct 606274 AATTTTTTTCTAACAATAA-CTCGCTTAAATATGAACCATCTTGTCCTGTTATTCCGAAG 606216 Query 48508 ATTAAAGCAACTTTCATA 48525 |||||||||||| |||| Sbjct 606215 ATTAAAGCAACTCGCATA 606198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665491305451040