Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq369 190 4e-43 seq368 152 9e-32 >seq369 Length=2804353 Score = 190 bits (210), Expect = 4e-43 Identities = 179/227 (79%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| || || |||| || || ||||||||| || ||||| || || ||| || Sbjct 2576896 TACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTC 2576955 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 2576956 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 2577015 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| ||| ||||| || | |||||| || || || || ||||| Sbjct 2577016 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2577075 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAAT 193377 || |||| ||||||||||| ||||||||||| ||| |||||||| Sbjct 2577076 TCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTA--AAAATAAT 2577120 >seq368 Length=2153551 Score = 152 bits (168), Expect = 9e-32 Identities = 172/229 (75%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 193106 aaaaaaaCCCGAGTAAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGT 193165 ||||||| | ||| ||||| | | ||||||||| |||| | || | || ||||| Sbjct 464624 AAAAAAAAATAAATAAATAATTAAAA-ACCACCTCTTAATCTTAACACTAAGTGTAATGT 464566 Query 193166 AGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGC 193225 || || || |||||| || || ||||| ||||| ||| |||||||||||||| || Sbjct 464565 AGATTCCTTTTGAATATTGTAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCAGC 464506 Query 193226 AAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTAT 193285 ||| |||||||| ||||| ||||| || ||||||||||||||||| ||||| | || | Sbjct 464505 AAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAAC 464446 Query 193286 ATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 ||| ||| || || || | ||| || || || ||||||||||| ||| Sbjct 464445 ATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCCT 464397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650216607040