Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29]
372 sequences; 24,055,504 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq370 275 9e-69
seq369 141 1e-28
seq368 129 9e-25
>seq370
Length=3208305
Score = 275 bits (304), Expect = 9e-69
Identities = 572/842 (68%), Gaps = 17/842 (2%)
Strand=Plus/Plus
Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922
|||||| || ||| ||||| ||||||| || || ||||| ||||||| | ||| |||||
Sbjct 164185 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 164244
Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTAT 17980
| ||| ||| ||||||||| ||| | || |||| | || ||| | |
Sbjct 164245 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAA--TTTTAGAGCATCCTAAACATTCT 164302
Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAG 18039
||||||||||| || |||||||| | |||||| ||||| || || ||||||| ||||
Sbjct 164303 AATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTAT 164361
Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099
|| | |||| | ||| ||||| | | || | || |||| ||||| |
Sbjct 164362 TAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 164421
Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159
|| ||| |||| | || ||| | ||||||| || | ||||| | ||| ||
Sbjct 164422 GATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAA---ATTAAGCA 164478
Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219
|||||| || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538
Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279
| | | | || | ||| || | |||||| || | ||||||| | || |||||
Sbjct 164539 GTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATAT 164598
Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA- 18338
|| ||||| || || || | | |||||||||||| | ||| | ||| ||
Sbjct 164599 TCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACG---AATTAGTA-TCATTAA 164654
Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398
|||||||| ||||||| | ||| | || ||| | |||||||||| ||
Sbjct 164655 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 164714
Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458
| |||| | ||||||| |||||| |||||| | || ||||| ||| ||| |||
Sbjct 164715 ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTT 164774
Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518
| ||||| || |||| | |||||| ||||| |||||| | |||| || | ||
Sbjct 164775 CTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTT 164834
Query 18519 GAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577
||| ||| || ||||| ||| ||| ||||||| || |||||||| ||| | |||
Sbjct 164835 GAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCA 164893
Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637
|||||||| || |||| || || |||||||| ||||| || || | || | | ||
Sbjct 164894 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCT 164953
Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697
| || ||| | |||| ||||| |||||| | |||||||||||| | ||| || | |||
Sbjct 164954 TTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTG 165013
Query 18698 TA 18699
||
Sbjct 165014 TA 165015
>seq369
Length=2804353
Score = 141 bits (156), Expect = 1e-28
Identities = 182/248 (73%), Gaps = 5/248 (2%)
Strand=Plus/Minus
Query 155765 aaaataatagagaaacaataaagtatttattgtttataataaaaatttatgtaataaaat 155824
|||| || | |||| | |||| | ||| || ||| | | | |||| | || |||||
Sbjct 2577159 AAAAAAAGATAGAATC--TAAATTTTTTTTTTTTTCTTTTCATTATTTTT--AAGAAAAT 2577104
Query 155825 gcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGA 155884
|||||| ||| | |||||||| ||||||||||| ||||| | || || || |||||
Sbjct 2577103 GCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATCTGA 2577044
Query 155885 TAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944
|| ||| || || || ||||| |||||||||||||| || ||||| || |||||
Sbjct 2577043 TACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACA 2576984
Query 155945 AAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004
|||||| || | ||| || || || | |||||| || || |||||||||||||||||
Sbjct 2576983 AAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATAT 2576924
Query 156005 ATCCAAAG 156012
|| ||||
Sbjct 2576923 -TCAAAAG 2576917
>seq368
Length=2153551
Score = 129 bits (142), Expect = 9e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909
||||||||||| || | || ||||| ||||| | ||| || || || |||
Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 464457
Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969
|| |||||||||||||| || || || || ||||||||||| || | ||| || || ||
Sbjct 464458 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAA 464517
Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTT 156028
| |||||| ||||||||||||||||| ||||| || ||| || | || | || ||
Sbjct 464518 TTAGAAGATGGAAGAACTTTATCAGATTACAATAT-TCAAAAGGAATCTACATTACACTT 464576
Query 156029 AGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058
|||||||||||||||||| ||| | ||||
Sbjct 464577 AGTGTTAAGATTAAGAGGTGGTTTTTAATT 464606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731868596795200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |