Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq370 275 9e-69 seq369 141 1e-28 seq368 129 9e-25 >seq370 Length=3208305 Score = 275 bits (304), Expect = 9e-69 Identities = 572/842 (68%), Gaps = 17/842 (2%) Strand=Plus/Plus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| ||||| ||||||| || || ||||| ||||||| | ||| ||||| Sbjct 164185 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 164244 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTAT 17980 | ||| ||| ||||||||| ||| | || |||| | || ||| | | Sbjct 164245 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAA--TTTTAGAGCATCCTAAACATTCT 164302 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAG 18039 ||||||||||| || |||||||| | |||||| ||||| || || ||||||| |||| Sbjct 164303 AATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTAT 164361 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || | |||| | ||| ||||| | | || | || |||| ||||| | Sbjct 164362 TAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 164421 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 || ||| |||| | || ||| | ||||||| || | ||||| | ||| || Sbjct 164422 GATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAA---ATTAAGCA 164478 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| || ||||| ||||||||||| |||||||| |||||||| || || || Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 | | | | || | ||| || | |||||| || | ||||||| | || ||||| Sbjct 164539 GTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATAT 164598 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA- 18338 || ||||| || || || | | |||||||||||| | ||| | ||| || Sbjct 164599 TCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACG---AATTAGTA-TCATTAA 164654 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||||||| ||||||| | ||| | || ||| | |||||||||| || Sbjct 164655 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 164714 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | |||| | ||||||| |||||| |||||| | || ||||| ||| ||| ||| Sbjct 164715 ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTT 164774 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | ||||| || |||| | |||||| ||||| |||||| | |||| || | || Sbjct 164775 CTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTT 164834 Query 18519 GAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 ||| ||| || ||||| ||| ||| ||||||| || |||||||| ||| | ||| Sbjct 164835 GAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCA 164893 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637 |||||||| || |||| || || |||||||| ||||| || || | || | | || Sbjct 164894 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCT 164953 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 | || ||| | |||| ||||| |||||| | |||||||||||| | ||| || | ||| Sbjct 164954 TTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTG 165013 Query 18698 TA 18699 || Sbjct 165014 TA 165015 >seq369 Length=2804353 Score = 141 bits (156), Expect = 1e-28 Identities = 182/248 (73%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 155765 aaaataatagagaaacaataaagtatttattgtttataataaaaatttatgtaataaaat 155824 |||| || | |||| | |||| | ||| || ||| | | | |||| | || ||||| Sbjct 2577159 AAAAAAAGATAGAATC--TAAATTTTTTTTTTTTTCTTTTCATTATTTTT--AAGAAAAT 2577104 Query 155825 gcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGA 155884 |||||| ||| | |||||||| ||||||||||| ||||| | || || || ||||| Sbjct 2577103 GCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATCTGA 2577044 Query 155885 TAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944 || ||| || || || ||||| |||||||||||||| || ||||| || ||||| Sbjct 2577043 TACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACA 2576984 Query 155945 AAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 |||||| || | ||| || || || | |||||| || || ||||||||||||||||| Sbjct 2576983 AAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATAT 2576924 Query 156005 ATCCAAAG 156012 || |||| Sbjct 2576923 -TCAAAAG 2576917 >seq368 Length=2153551 Score = 129 bits (142), Expect = 9e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || ||||| ||||| | ||| || || || ||| Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 464457 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || ||||||||||| || | ||| || || || Sbjct 464458 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAA 464517 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTT 156028 | |||||| ||||||||||||||||| ||||| || ||| || | || | || || Sbjct 464518 TTAGAAGATGGAAGAACTTTATCAGATTACAATAT-TCAAAAGGAATCTACATTACACTT 464576 Query 156029 AGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 |||||||||||||||||| ||| | |||| Sbjct 464577 AGTGTTAAGATTAAGAGGTGGTTTTTAATT 464606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868596795200