Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq370 279 1e-69 seq369 187 5e-42 seq368 143 5e-29 >seq370 Length=3208305 Score = 279 bits (308), Expect = 1e-69 Identities = 544/794 (69%), Gaps = 22/794 (3%) Strand=Plus/Plus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| ||||| | ||| ||| |||||||||||||| || || ||||| | | | Sbjct 164236 TGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAA-ATTTTAGAGCATCCTA 164294 Query 49640 TACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCA 49698 |||| |||||||||||| || |||||||| | |||||| ||||| | | | |||||| Sbjct 164295 AACATTCTAATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCA 164354 Query 49699 TACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt 49758 | || | ||| | | ||||||| | ||| ||||| | |||| | ||||||||||| Sbjct 164355 TTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTT 164414 Query 49759 gtttaattatcataattatattatt--ttttgataattta-tatttaatatgattcgcat 49815 ||||| || || || || ||| || || | |||| ||| ||||| | || Sbjct 164415 CTTTAACGAT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----AT 164468 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 | ||||| || |||||| |||||||| || || || ||| || ||||||||||||| Sbjct 164469 AAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAA 164528 Query 49876 AAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 | || || || || ||| || | | || |||| |||||| |||| |||||||| | Sbjct 164529 ATGTCAAACCGTGTAATTTATTTTGT-TTCTTAAACCAAAAAATTGCACAAAAACTACCA 164587 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAAC--ATTAATT 49992 || ||||| || || ||||| ||| || | |||||| | ||||| |||| Sbjct 164588 CTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTA--G 164645 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 |||||| || ||||| ||| ||||| |||||| ||||| | | ||| ||||||| Sbjct 164646 TATCAT-TA--ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTT 164702 Query 50053 CTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112 ||||||| | |||||| | | |||| | ||||||| Sbjct 164703 CTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATA 164762 Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTG 50172 || ||| |||| ||||| | | ||| | |||||||||||| |||||||||| | | | Sbjct 164763 AACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAG 164822 Query 50173 CTTCTGAATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCA 50231 |||| | ||||| || || || | | | | | ||||| || |||| |||||| Sbjct 164823 CTTCCGTTATTTGAACCTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCA 164881 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||| |||||| || |||||||| || | || ||||||||||| ||||| || || || Sbjct 164882 TCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAAT 164941 Query 50292 TTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 || || || || | ||| | |||||||| | ||||||| ||||||||| || ||| Sbjct 164942 TTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCT 165001 Query 50352 ACGGATTTTTTATA 50365 | | ||| || || Sbjct 165002 TCAGCTTTCTTGTA 165015 >seq369 Length=2804353 Score = 187 bits (206), Expect = 5e-42 Identities = 176/222 (79%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCAT 192385 ||| || |||||||||| || ||| || ||||||||||| ||||| || | | |||| | Sbjct 2576896 TACCAAGTGTAAAGTAGATTCCTTTTGA-ATATTATAATCTGATAAGGTCCTTCCATCTT 2576954 Query 192386 CCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTT 192445 | |||||||| |||||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct 2576955 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 2577014 Query 192446 GTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTT 192505 | ||||| || ||||| || | ||| || | || || || || |||||||||| Sbjct 2577015 GAATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTT 2577074 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 | |||||||||||||| | ||| || |||||||| ||| ||| Sbjct 2577075 TTCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTAAAAA 2577116 >seq368 Length=2153551 Score = 143 bits (158), Expect = 5e-29 Identities = 122/148 (82%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 || ||||||||| | | ||| ||||| ||||| |||| || ||| || ||||| |||| Sbjct 464601 AAAACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGA-ATATTGTAAT 464543 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | ||||| |||| | |||| || |||||||| |||||||| |||||||| ||||| |||| Sbjct 464542 CTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAG 464483 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||| ||||||||||||||||| ||||| Sbjct 464482 GTGGAATTCCTTCTTTATCTTGAATTTT 464455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475307722200