Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq370 275 1e-68 seq369 178 2e-39 seq368 156 8e-33 >seq370 Length=3208305 Score = 275 bits (304), Expect = 1e-68 Identities = 573/848 (68%), Gaps = 26/848 (3%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | ||| |||| || ||||||||||||||||||| | ||| |||| Sbjct 164184 ATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 164243 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| ||| |||||||||||||| | | || ||||| | | | ||| | | Sbjct 164244 AGTCCATCCAATTAAATGGATTTTTGG-AATGGAAAATTTTAGAGCATCCTAAACATTCT 164302 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || |||||||| | |||||| |||| | | | ||||||| || | | Sbjct 164303 AATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATT 164362 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | ||||||| | ||| ||||| | |||| | ||||||||||| ||||| Sbjct 164363 AAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACG 164422 Query 39069 atcataattatattatt--ttttgataattta-tatttaatatgattcgcatataGTAAA 39125 || || || || ||| || || | |||| ||| ||||| | ||| | ||| Sbjct 164423 AT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----ATAAATTAAG 164476 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||| |||||||| ||||| || ||| || |||||||||||||| || || Sbjct 164477 CAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAA 164536 Query 39186 CC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || || ||| || | | || |||| |||||| |||| |||||||| | || || Sbjct 164537 CCGTGTAATTTATTTTGT-TTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAA 164595 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAAC--ATTAATTTATCATCT 39302 ||| || || ||||| ||| || | |||||| | ||||| |||| |||||| Sbjct 164596 TATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTA--GTATCAT-- 164651 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| ||| ||||| |||||| ||||| | | ||| |||||||||||||| Sbjct 164652 -TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCA 164710 Query 39363 TTAAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAT 39420 | |||||| || || | || Sbjct 164711 TGAAATAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTAT 164768 Query 39421 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTG 39480 | |||| ||||| | | ||| | |||||||||||| |||||||||| | ||||| | Sbjct 164769 ATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCG 164828 Query 39481 AATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCATCAGAT 39539 ||||| || || || | | | | | ||||| || |||| ||||||||| | Sbjct 164829 TTATTTGAACCTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCATCACTT 164887 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| || |||||||| |||| || ||||||||||| ||||| || || || || || Sbjct 164888 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCA 164947 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || || | ||| | |||||||| | ||||||| |||||||||||| ||| | | | Sbjct 164948 AAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCT 165007 Query 39660 TTTTTATA 39667 || || || Sbjct 165008 TTCTTGTA 165015 >seq369 Length=2804353 Score = 178 bits (196), Expect = 2e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 171860 TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATC 171919 ||| || |||||||||| || || |||||||||||||||||| | | | | || || Sbjct 2576896 TACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTC 2576955 Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 |||||||| |||||||| |||||||| ||||| ||||| || ||||||||||||||||| Sbjct 2576956 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 2577015 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||| || ||||| || ||||| || | || || || || ||||||||||| Sbjct 2577016 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2577075 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAA 172080 |||||||||||||| | || || |||||||| ||| ||| Sbjct 2577076 TCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTAAAAA 2577116 >seq368 Length=2153551 Score = 156 bits (172), Expect = 8e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || ||| ||||| ||||| |||| || || |||||| ||||| Sbjct 464601 AAAACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATC 464542 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 |||||||| || | | || || |||||||| |||||||| |||||||| ||||||||||| Sbjct 464541 TGATAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGG 464482 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||||||||||||||| ||||| || ||||| || || || || | || Sbjct 464481 TGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTC 464422 Query 172019 TACTTCTAGAGTAATGGTTTTACC 172042 || || || || || ||||| || Sbjct 464421 GACGTCAAGGGTTATAGTTTTTCC 464398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131791117600