Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq370 206 8e-48 seq367 125 2e-23 seq368 95.1 4e-14 >seq370 Length=3208305 Score = 206 bits (228), Expect = 8e-48 Identities = 788/1223 (64%), Gaps = 32/1223 (3%) Strand=Plus/Plus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || |||||| | | ||| || | | Sbjct 1474965 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCAT 1475024 Query 155371 CAGATGTAAATGCGATATCCATCTTGAA-AAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 ||||| | ||| |||||| | | |||||| || ||||| || ||||| |||||| Sbjct 1475025 CAGATTCATATG-GATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATA 1475083 Query 155430 CCGACTGGGCGATGCCT-GTAATTGCTCCTGCTTGTCTTCTT-GTTTGGGTAAAAATTCA 155487 || | || | ||| || ||| | | | | ||| |||||| | ||| ||| |||| Sbjct 1475084 CCAATAGGCCTATGTCTAGTATTAGATGTTT-TTG-CTTCTTTGACTGGATAATAATTTC 1475141 Query 155488 CATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCA 155544 || ||||| |||| ||||||| |||| | | ||||| | || ||| || Sbjct 1475142 TTTCTATAATTTTATCTAAATTTCTTGTAATAATT---TTGGTAATTTCATATAACTTTT 1475198 Query 155545 CATAGTCAAATG---TTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGAT 155601 | | | ||| |||| ||| || |||||| ||| | | | ||||| |||| || Sbjct 1475199 TAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAAT 1475258 Query 155602 TACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAAC 155661 ||||||| ||| || | | | ||||| | ||| ||||| || | |||| || Sbjct 1475259 TACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGTTACTAC 1475318 Query 155662 TCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAA 155721 || || || || ||||| ||||| || ||||| ||||||| ||| || ||||| | Sbjct 1475319 ATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTTTATATAGCA 1475378 Query 155722 TGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCAT 155781 | ||||| |||||| || || || | | || | ||| | || | ||| Sbjct 1475379 TATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGAGCAA 1475438 Query 155782 TAATTTGCTTGTTGTATCTGCCTTCCGACT-CATATTTCATATACAGCGTTCGGTAATCC 155840 || | | || || | | || | || ||||||| |||| | || | || Sbjct 1475439 GAACT-GTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTTTCAAATTCT 1475497 Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTA 155900 ||||| || ||||| | || || || | || || || | | | |||| ||||| Sbjct 1475498 TCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTA 1475557 Query 155901 TTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTT 155960 || | | || | || |||||| | |||| |||| | |||||| || | || | | Sbjct 1475558 TTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGT 1475617 Query 155961 GCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGA 156020 || || | || || | || || ||||| | || ||||| ||||| ||||| | | Sbjct 1475618 GCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATATATCTGAA 1475677 Query 156021 TGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACA 156077 || ||| || | ||| | |||||| || || | || || ||| ||||||||| Sbjct 1475678 TGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTTGATCTACA 1475737 Query 156078 TACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTG 156137 || | ||||| | ||| || || | || |||||| | | |||||| || | |||||| Sbjct 1475738 TATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTG 1475797 Query 156138 GTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCT 156197 || || | ||||| ||| | | | || || | || |||||||| ||| Sbjct 1475798 GTACCTCTAATATAAGAATTTTGTCCTCTTATATCTTGTACTGCTACACCAATACCTCCT 1475857 Query 156198 GACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCA 156257 | |||| |||| ||| |||| |||| || | |||||||||||||||||||| Sbjct 1475858 GCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCT 1475917 Query 156258 TCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAAT 156317 ||| |||||||| | | || ||| | ||| |||| ||| ||||| | || || Sbjct 1475918 GCTTTCATTGATAACAAGAAACAAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAAC 1475977 Query 156318 AGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC-----CT 156372 | |||||| |||||||| ||||||| || | |||||| ||| ||||| || || Sbjct 1475978 AATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGTTTCTAGAGCT 1476037 Query 156373 TAATCT-TCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGA 156431 | |||| | ||| || || |||| ||||| || ||||| | | ||| ||| Sbjct 1476038 TTATCTATGTCATCTATA------TGTATACCAATAGAAACTCTCATTAATAAATGTTGA 1476091 Query 156432 GGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAAC 156491 || | || | ||| || ||| || | | || | | ||||| |||||||| Sbjct 1476092 GGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACGTTTTAAAT 1476151 Query 156492 CCGAAATAATCAAACAGAAAATC 156514 || ||||||||| | |||||| Sbjct 1476152 CCAAAATAATCATAATTAAAATC 1476174 Score = 127 bits (140), Expect = 6e-24 Identities = 229/335 (68%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||| ||||| ||||| |||| | ||| || | || || Sbjct 2594379 CTTCTTTTTGATCCTACGGCATCGATTTCATCAATAAAAACAATACATGGTGCATGTTTC 2594438 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || | ||| | |||||||| | ||| || | ||||||| |||||||| || Sbjct 2594439 TTTGCTGCTTGAAAAAGTTCTCTTATTCTCCTTGCACCTACACCAACAAACATTTCTTCA 2594498 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | || |||| | |||| ||||| ||||| ||||| | ||||| || Sbjct 2594499 AATTCTGAACCTGAGGCTTGTAAAAATGGAACATTAGCTTCTCCTGCAATAGCCCTAGCA 2594558 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || || || || ||| ||| ||||| || || ||||||| ||| || Sbjct 2594559 ATTAATGTTTTTCCGGTACCTGGTTCTCCTGATAATAAAATACCTTTTGGTAATTTGGCA 2594618 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | |||||| || || || | | Sbjct 2594619 CCAATTTTGGTAAATTTATCTGAATTTTTTAAATAATCAATAATTTCTTCTAGCTCCTGT 2594678 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | |||||||||||| ||||| ||||| || Sbjct 2594679 TTCACTTCATCACATCCTTTCACATCTGCAAATGT 2594713 >seq367 Length=1919181 Score = 125 bits (138), Expect = 2e-23 Identities = 340/509 (67%), Gaps = 31/509 (6%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| | ||||| ||||| ||||| ||| || || | Sbjct 658406 CTATCAAATCTACCTGGTCTAGTAATAGCTGGATCTAAAATATCTACTCGATTCGTACCA 658465 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 || || ||||| | || ||| | | | | |||||||||||| | || ||||| Sbjct 658466 GCTAAAACAACTACCTTATCATTAGATGTA-TGAAATCCATCCATCTCTACTAGCATTTG 658524 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC--CGAATCGCTCCtt 289023 ||| | ||| | ||| |||||||| || ||||| |||| |||| | | |||| Sbjct 658525 ATTTAATGTGTTTTCTCTTTCATCGTT---ACCTC------CACCAGCGAAAC-CACCTT 658574 Query 289024 --------tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| |||| |||||||||||||| || || ||||| | | | || | || || Sbjct 658575 TTGATCTCTTTCTACCGACAGCATCAATTTCATCTATAAAAATTATAGAAGGTGCATGTT 658634 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 ||| || ||||||||||||| || | |||| || | |||||| | | ||| | Sbjct 658635 TTCTTGCTTGAGCAAATAATTCTCGAACCCTTGATGGACCTATTCCAACAAAAACTTCAA 658694 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 ||| ||| | || || | || |||| ||||||||||| || ||||| || | | Sbjct 658695 TAAAATCACTACCGCTTATATTAAAAAATGGAACATTTGCTTCTCCAGCTACAGCTTTTG 658754 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || | || || || || || || | || ||||| | || || |||| ||| | Sbjct 658755 CTAGTAAAGTTTTCCCGGTACCCGGGGCACCACATAATAATGCACCTTTAGGTATTTTAG 658814 Query 289256 C-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | |||| | | || |||||| || | |||||||| ||||||| |||| || ||| Sbjct 658815 CACCCA--ATATTTCATATTTAGTTGGATTTTTTAAAAAATCTACAAATTCCATAATTTC 658872 Query 289314 ATATTTTGCCT-CATCACATCCTGCTACA 289341 | ||| || | | ||| | || |||||| Sbjct 658873 TTCTTTAGCTTGCTTCATA-CCAGCTACA 658900 >seq368 Length=2153551 Score = 95.1 bits (104), Expect = 4e-14 Identities = 374/579 (65%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 288679 GCTAAAATAACCGCCTCATTCGCCATATTTTCAATATCCGCTCCTGAAAATCCAGATGTT 288738 ||||||||| |||||||| | | |||||| | ||| || || ||||| |||| |||| Sbjct 1596093 GCTAAAATAGTAGCCTCATTTACAACATTTTCTAAATCTGCACCAGAAAACCCAGGTGTT 1596034 Query 288739 AGAATTGCGATTTCATCTAAATCGGT--ATTAGGCATTACATTTTTACGCTTTAA-ATGG 288795 | |||| || | || | ||| ||| || || ||| ||||| || Sbjct 1596033 AATCTTGCTATCTTTTCAATATCTTCTAATTTTAAATCACTTTTAATTTTTTTAATATAT 1595974 Query 288796 ACGTCTAAAATTTTACGACGACCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCA 288855 | ||||||||||| | ||| | ||| || || || || |||||||| Sbjct 1595973 ATTTCTAAAATTTTCTTTCTTCCATTAATATCGGGTAATGGTACATAAACGATCCTATCA 1595914 Query 288856 AACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAAT 288915 || ||||| | || ||| || |||||| |||| ||||||||| || | | Sbjct 1595913 AATCTACCTGGTCGTAATAAAGCACTGTCTAAGGTATCAATTCTGTTTGTCGCACCTATA 1595854 Query 288916 ACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTT 288975 || | |||| | | || | ||||||||||||| ||| | |||||| | |||| Sbjct 1595853 ACCATAATATGTACAGTATTACTAAATCCATCCATTTCAACTAATAATTGATTTAATGTT 1595794 Query 288976 TGTTCCCTTTCATCATTTGAACCT----CTTGAATCA---CCCGAATCGCTCCttttttt 289028 || || ||| || |||| |||| | | || || || ||| ||||| ||| Sbjct 1595793 TGATCATGTTC-TC-TTTG-ACCTGCACCGTTAA-CAGATCCTGAA---CTCCTCTTTCC 1595741 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | | |||| | | ||| ||| || Sbjct 1595740 ACCAATTGCATCAATTTCATCAATAAATACAATGGATGGAGCAACTGATCTTGCATGAGC 1595681 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | | || | || || |||| ||||| ||||||| |||||| | | Sbjct 1595680 AAATAACTGCCGTATTCTTTTAGCCCCTTGACCTACATATATTTCTATAAATTCTGGTCC 1595621 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | ||| ||| ||||| ||||| |||||| || || || | | || || Sbjct 1595620 AGAAGTATAAATATATGGAACATTAGCTTCAGTTGCTACAGCTCTAGCTAACATGGTTTT 1595561 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| ||||| ||||| |||||| ||| |||||||| Sbjct 1595560 TCCTGAACCAGGAGGTCCAACTAATAAAACACCCTTTGG 1595522 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| | ||| ||||| || || ||||| | | | || | || || ||| || || || Sbjct 1970890 CCAATTGAATCGATTTCATCCATAAAAATAATAGAAGGTGCATGTTCTCTAGCCATAACA 1970949 Query 289090 AATAATTCTCTTAC---ACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||||||| || ||| ||| || | ||| | ||| | | ||| ||||||||| Sbjct 1970950 AATAATTCTCTAACCATACGTGATCCTTC---ACCTATATATTTCTGTACTAATTCAGAA 1971006 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || ||| ||| || || || || | ||||||||| || || | | ||| Sbjct 1971007 CCTGAAACTCTAATAAAGGTACAATCTGTATGATGTGCTACTGCTCTTGCTAATAATGTT 1971066 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || |||||||| || ||||| | ||||| ||||| || ||| Sbjct 1971067 TTTCCTGTTCCTGGAGGTCCATATAATAATACTCCTTTAGGT 1971108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810584949364