Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq370 120 4e-22 seq358 116 5e-21 >seq370 Length=3208305 Score = 120 bits (132), Expect = 4e-22 Identities = 323/490 (66%), Gaps = 33/490 (7%) Strand=Plus/Minus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 |||||| || || ||| ||| ||| |||| ||||| | | ||| | |||||||| Sbjct 1301824 TAAGGTGGCACAGTTAGTTGGTTATATTGCTGAACATAGTGCATATCATCATGGTGAGTC 1301765 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 ||| |||| || || || | || ||| |||||| || | ||||||||| Sbjct 1301764 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1301705 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 || | |||||| |||||||||||||| ||| |||||| ||||||||| | |||| Sbjct 1301704 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1301645 Query 166132 ATCAAGATATATTTATACCAAA----CCACATAAAATATTAAAATATATATTTAGAGAAG 166187 | |||||||||| | ||| ||| | | | || | | |||||||| ||| Sbjct 1301644 AGCAAGATATATATTTACAAAATTGGCAAGCTCAA----CCAGAAGTATATTTAATGAAT 1301589 Query 166188 AAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTCATT 166235 | || || || || ||||| ||| | || || || |||||| ||| Sbjct 1301588 ACGACGATCCCATATTAAAATATTTAAATGAAGAAGGACAGAAAATTGAACCACAATATT 1301529 Query 166236 TTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGT 166295 ||| ||||| || ||| ||| ||| | ||||||| | |||||||| ||||||| | Sbjct 1301528 ATATACCAGTGATTCCAACAATATTAGTAAATGGTTGTGAAGGTATTGGTACAGGATATT 1301469 Query 166296 CATGTTTTATACCTCAATATAATCCTTTAGAATTAATTGATGCTATTTGTTTAAAATTGT 166355 | | |||||||| | |||||| | ||| | |||||| || |||||| | Sbjct 1301468 CTTCATTTATACCGAATTATAATTATAAAGATATTATTGATAATA-----TTAAAA--GA 1301416 Query 166356 TAAACaaaaaaaataatggcataaacaatctttg--tcctttttataaaaattttaaagg 166413 || | ||| ||| | ||| || | || || ||| | |||||| |||||||||| Sbjct 1301415 TACATAAATAAAGAA---CCATTAA-TACCTATGGTTCCATGGTATAAAGATTTTAAAGG 1301360 Query 166414 taaaataaaa 166423 || |||| || Sbjct 1301359 TAGAATAGAA 1301350 >seq358 Length=791303 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 194587 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 194646 ||||| ||||| || ||||| ||||| || | | ||||| |||||| | |||||||| Sbjct 579369 AAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 579428 Query 194647 CATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGTCGTTC 194705 ||||| |||||| || | | |||||| ||||| ||||||||| || | || Sbjct 579429 CATGCAAGAAGTAGAGGACCATTAACTATGATTACAA-GACAACCAACAGAAGGAAGATC 579487 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 194765 || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| | Sbjct 579488 AAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 579547 Query 194766 TACTCAATTCTTAAATGAAAGAATGTTT 194793 | | || | ||||| |||||| | ||| Sbjct 579548 TGCAAAAATGTTAAAAGAAAGATTATTT 579575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632486658923360