Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq369 136 4e-27 seq368 118 1e-21 >seq369 Length=2804353 Score = 136 bits (150), Expect = 4e-27 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| |||| || ||||| ||||| || || || || |||| | Sbjct 2577105 ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGA-GCCATC 2577047 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || || | ||| ||||| || ||||| ||||||||||| ||||| |||| Sbjct 2577046 TGATACGATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAAGGAATTCCTCCTGATC 2576988 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||| | || || ||||| || ||||| | || ||| || | | | |||||||||| Sbjct 2576987 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2576928 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | |||||||||||||| || |||||||||| Sbjct 2576927 ATATTCAAAAGGAATCTACTTTACACTTGGT 2576897 >seq368 Length=2153551 Score = 118 bits (130), Expect = 1e-21 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACC-GACACAGTAGA-AACGGTAAAACAAA 24788 || |||||||| || || || || || |||| | ||||| | || || | ||| |||| Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACCATTGAGAATGTTAAGGCAAA 464456 Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAAC 24848 | || ||||| ||||||||||| || || || |||||| | || || ||||| || |||| Sbjct 464457 A-ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAAC 464515 Query 24849 AGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 | | || ||| |||| | |||||||| || |||||||||||||| ||| |||||| Sbjct 464516 AATTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACT 464575 Query 24909 TGGTGTTGCGATT 24921 | ||||| |||| Sbjct 464576 TAGTGTTAAGATT 464588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895507976160