Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq358 122 1e-22 seq360 107 3e-18 >seq358 Length=791303 Score = 122 bits (134), Expect = 1e-22 Identities = 165/225 (73%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 201904 GAAAAAT-TCAAAGT--AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATA 201960 ||| ||| | ||||| ||||| ||||| || |||||||| ||||| | | ||||||| Sbjct 579352 GAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATA 579411 Query 201961 TGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAA 202019 ||||| | |||||||| ||||| |||||| || | | |||| | |||||| | ||| Sbjct 579412 TGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAA 579470 Query 202020 CCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT 202079 |||| || | || || |||||| |||||||||||||||||||||| ||||||| Sbjct 579471 CCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGT 579530 Query 202080 ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTT 202124 || | ||||| | || || | ||||| |||||| | ||| Sbjct 579531 ATGATATCACATGGATCTGCAAAAATGTTAAAAGAAAGATTATTT 579575 >seq360 Length=1059361 Score = 107 bits (118), Expect = 3e-18 Identities = 442/676 (65%), Gaps = 42/676 (6%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 |||||||||||||| || ||| | ||| | | || ||||| ||| || ||| | | Sbjct 670438 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTTTTAAGAG 670494 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473 ||| || ||||||| | ||| | || | ||| ||||||| |||| ||||||| Sbjct 670495 GAATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGTTGTTAA 670554 Query 180474 ATGATATTGGTGTTAAAG-TGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532 || | | || ||| | | ||| | | ||||||| | | | ||||||||| | | Sbjct 670555 ATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAGA 670610 Query 180533 GGATTTCATTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGA 180589 ||| |||| | ||||| | ||||||||||| |||||||| |||||||||||| Sbjct 670611 AAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGA 670667 Query 180590 CATGCAGGAGCTCAATATATTGA-CTGTGATACCAACTATATCGGGCAAGGTATAGACCA 180648 ||| || ||| |||||| | ||| || || ||| |||| | || || Sbjct 670668 CATTTCGGTGCTGAATATACAAATATGT-ATGATAATTATGAAAATAAAGGAGTGGATCA 670726 Query 180649 ATTAAGCCAAGTTATAGAAACT---ATAAAAAATAATCCCGAATGCCGAAGAATAATCAT 180705 ||||| || |||| || | || |||||| |||| | | ||||||| | | Sbjct 670727 ATTAA---AAAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTT 670783 Query 180706 AGATAGTTGGAATGTATCACA--ATTACCAGATATGGCTCTTCCACCATGTCACTGTTTG 180763 | ||||||||| | | | ||| | ||||| | || || ||||| ||| Sbjct 670784 GTGTGCATGGAATGTAAAAGATCTTGACC--AAATGGCATTACCTCCTTGTCATATTTTA 670841 Query 180764 GTACAATTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTG 180821 || ||||||| || || ||||| | ||| ||||||||||||| Sbjct 670842 TGTCAGTTTTATGTTTTCGATGGGAAATTATCATGTATT-----ATGTATCAAAGATCAT 670896 Query 180822 CAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-ATTTTTGGT-ATGTGT 180879 |||||||| |||| ||||| | ||||||||||| ||||| |||||| | || || Sbjct 670897 GTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGA 670956 Query 180880 TCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCA 180939 | | | |||| || ||||| |||| | || || ||| ||| || ||| || Sbjct 670957 TTGCAC-AAGT-CTGTAATTTGCAACCTGCGCAGTTCATACACGTTTTAGGAAATGCACA 671014 Query 180940 TGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCTTACAAGT 180998 ||| ||| ||| || ||||| |||||||||||| | | ||||| ||||| | | | Sbjct 671015 TGTTTATAATAATCACATTGATAGTTTAAAAATTCAACTTAACAGAATACCCTATCCA-T 671073 Query 180999 TTCCAAAAGTAAAATT 181014 | |||| | | ||||| Sbjct 671074 TCCCAACACTTAAATT 671089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655276952948000