Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq369 190 4e-43 seq368 161 2e-34 >seq369 Length=2804353 Score = 190 bits (210), Expect = 4e-43 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| | ||||||||| || || ||||||||||| |||| | || || |||||| Sbjct 2576897 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2576956 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||||||||| |||| |||||||||||| ||||| |||||||| ||||||||| Sbjct 2576957 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 2577016 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| || ||||| |||||||||||| || || || || | || || || || Sbjct 2577017 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTT 2577076 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || |||||||| || |||||| Sbjct 2577077 CCAGTTAATGTTTTTACAAAAATTTGCATT 2577106 >seq368 Length=2153551 Score = 161 bits (178), Expect = 2e-34 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | | |||||||| | |||||||| || || ||||| ||||| || Sbjct 464598 ACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATCTGA 464539 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | |||| || ||||||| ||||||||||||||| |||| ||||||||| || || || Sbjct 464538 TAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGG 464479 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| ||||| || ||||| ||||| || ||| || || || Sbjct 464478 AATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGAC 464419 Query 82763 TTCCAAAGTTATCGTCTTGCCT 82784 || | ||||| || || ||| Sbjct 464418 GTCAAGGGTTATAGTTTTTCCT 464397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822520366108