Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq369 100 5e-16 seq368 86.0 1e-11 >seq369 Length=2804353 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| ||||||| || ||||||||||| |||| || || | |||||||| Sbjct 2576908 AGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCC 2576967 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||||||| | ||| | ||| |||| ||||||||||| ||||| || Sbjct 2576968 AGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTT 2577027 Query 81755 TATATTTTCAATCGTAT 81771 | ||| |||||||||| Sbjct 2577028 AACATTCTCAATCGTAT 2577044 >seq368 Length=2153551 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| ||||||| || ||||| ||||| |||| |||||| | |||||||| Sbjct 464567 GTAGATTCCTTTTGAATATTGTAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCA 464508 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| ||||||||| | || | ||| |||| ||||||||||| ||||| || Sbjct 464507 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 464448 Query 81756 ATATTTTCAATCGT 81769 | ||| ||||| || Sbjct 464447 ACATTCTCAATGGT 464434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903406999137920