Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq370 116 3e-21 seq369 113 4e-20 seq368 107 2e-18 >seq370 Length=3208305 Score = 116 bits (128), Expect = 3e-21 Identities = 274/405 (68%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 137025 ATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGT 137084 ||||||||| | || || || ||||| ||||| || | ||| |||| ||| | || || Sbjct 1474717 ATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGT 1474776 Query 137085 CGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTGT--ACGGCCAATTGTTGCTTG 137142 ||||| || | || ||||| || | |||||| ||| |||| ||| | |||| Sbjct 1474777 TGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGG---ATTTTAGCTTT 1474833 Query 137143 -AGCTCTTTCCAGTTCCACAGATTGTT--CGATTGGGTTAT-ATTCCACAAATCAAACTG 137198 | || | ||| | ||| ||||| | | | ||| |||||||| |||||| || Sbjct 1474834 TAATTCATCCCAATCCCAATATTTGTTATCAACT---TTAGCATTCCACATATCAAATTG 1474890 Query 137199 CAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGC 137258 || | || | ||||| |||||| || |||||| ||||||| ||| || | | || Sbjct 1474891 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1474950 Query 137259 CAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAA 137318 || ||||| | | ||| || |||| || |||||||| | ||| || ||||||| Sbjct 1474951 CAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA 1475010 Query 137319 TTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC-CAATATAGCGAAAGCATCTGCAAGTC 137377 |||| | || | | || || || ||||| |||| || | |||||| | || Sbjct 1475011 TTCTTTTGCAGCATCAGATTCATATGG-ATATCTTAATAACATAAATGTATCTGCTAATC 1475069 Query 137378 CTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTT 137422 |||||| ||| ||||| ||||| || ||| || ||| ||| ||| Sbjct 1475070 CTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTT 1475114 >seq369 Length=2804353 Score = 113 bits (124), Expect = 4e-20 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 || || || |||||| | ||||||||||||||||| |||||| | || || | || || Sbjct 2577114 TTTAAGAAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTT 2577055 Query 25226 GAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 || |||| | ||||| || ||| | || || ||||||| |||||||| || || || Sbjct 2577054 GA-GCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCC 2576996 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTC 25342 || ||||| |||||| | || | | || |||||| | ||||||| || | | || Sbjct 2576995 TCCTGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATC 2576936 Query 25343 AGCGATTACAATATTCAAAAAGAATCCAC 25371 || |||| ||||||||||| ||||| || Sbjct 2576935 AG--ATTATAATATTCAAAAGGAATCTAC 2576909 >seq368 Length=2153551 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | || || | || ||||| |||| | || || || ||| | || || ||| Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACCATTGAGAATGTTAAGGCAAA 464456 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| || || || || || || |||||| | || | | || ||||| Sbjct 464457 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 464516 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | | ||||||||||||||||| ||||| || | || || Sbjct 464517 ATTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACTT 464576 Query 25381 AGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| ||||| || Sbjct 464577 AGTGTTAAGATTAAGAGGTGG 464597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092330311040