Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq370 517 2e-141 >seq370 Length=3208305 Score = 517 bits (572), Expect = 2e-141 Identities = 1145/1700 (67%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| |||||| || || ||||| ||||| | |||||| ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG---CTCGTATTTTGAATGGAT 68631 || | ||| || | | || ||| | |||||||| | || ||| |||||| | Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACTT 1474594 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 ||| | | ||| | | | || || || |||| ||| || ||| || |||| Sbjct 1474595 CCATTGTGAGCTATTAATTGCTGTTTCATGTCTTCATCCCATAAACCTCTGTCAAATAAA 1474654 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 || | | | ||| |||||||| | |||||| ||| ||| ||||| | | ||| Sbjct 1474655 TCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATAA 1474714 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 |||||||| ||||||||||| | |||||||| ||||| |||||||| | ||| |||||| Sbjct 1474715 ATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCA 1474774 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871 |||||||||||||| | ||||| ||||| | ||||||| | ||||||| ||||| Sbjct 1474775 GTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTT 1474834 Query 68872 AGATGTTTCCAATCCCAAAGATCAGATGGTA-CAAC------ATTCCAAAGATCGTATTG 68924 | | | |||||||||| | || || |||| |||||| | ||| |||| Sbjct 1474835 AATTCATCCCAATCCCAATATT----TGTTATCAACTTTAGCATTCCACATATCAAATTG 1474890 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 || || || | ||||| ||| | ||| | |||||| ||||| | | ||| Sbjct 1474891 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1474950 Query 68985 TAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTG 69042 | |||| || || | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1474951 CAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 | |||| ||| | | || ||||||| ||| | ||||||| |||||| ||| Sbjct 1475009 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1475068 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || ||||| |||||||| ||||| |||||||| |||| || ||| |||||| | Sbjct 1475069 CCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACT 1475128 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACTTTAACCACGT 69220 ||||||||||| | ||||||||||||| | ||||| | | || | ||| | | Sbjct 1475129 GGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAAT--TTTGGTAATTT 1475186 Query 69221 CCTTTAGTTTGAGAAAATCAAATCGT-------CCATCTATAACAAACATATTCAGTGCT 69273 | | || || ||||| ||| | ||| | || |||| || | ||| Sbjct 1475187 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTA-CAAATTTACATAAAGCT 1475245 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | |||||| | |||||| || || || |||| || | | ||||| || || || | Sbjct 1475246 ATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAA 1475305 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 |||| ||||||||||| ||||| |||| ||||| |||||| ||| ||||| | Sbjct 1475306 CATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAA 1475365 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAA 69453 || || || || ||| | || || ||||| || || || | |||| ||| Sbjct 1475366 TCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1475425 Query 69454 ACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATAT 69510 | | |||| | || || || | | | || |||| |||||||| |||||| Sbjct 1475426 AAATCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1475482 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 | ||| ||||| || |||||| ||| || || |||||||||||||||||||| Sbjct 1475483 AATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1475542 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 |||| ||| | || || ||||||| |||||||| ||||| |||| ||| | ||| Sbjct 1475543 AATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1475602 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAA 69689 ||| | ||||| | ||| |||||| ||||| || | ||| |||| ||| | ||| Sbjct 1475603 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAA-ATCTAAAAA 1475661 Query 69690 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATT 69749 || | ||||| |||||||||||||| | ||| | || | |||| ||||| Sbjct 1475662 TTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCC 1475721 Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| ||||| ||||| | |||| | ||||| | ||| || | | ||| Sbjct 1475722 TCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACC 1475781 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATAT-TACTAATAG 69868 ||||||| | ||||| || || ||||||| | | | | |||| | || | | Sbjct 1475782 ATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTCCTCTTATATCTTGTACT-G 1475840 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 || ||| || |||||||| ||||| |||| |||||| |||| | || ||| | | Sbjct 1475841 CTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAA 1475900 Query 69929 TACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 |||| || || ||| || ||| || ||| ||| ||||| ||||||||| | | Sbjct 1475901 TACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTT 1475959 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 ||||| | |||||| |||||||||| ||| || || || |||| | ||| | | | Sbjct 1475960 GGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAA 1476019 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATC 70107 | |||||||| | |||| ||||| || ||| || || || | || | ||| Sbjct 1476020 TGATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATT 1476079 Query 70108 AACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 || | ||| ||||||| ||| | |||||||||| || || | || ||| ||||| Sbjct 1476080 AATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCC 1476139 Query 70168 AGAGTTTTAAACCCAAAATA 70187 | |||||||| |||||||| Sbjct 1476140 AACGTTTTAAATCCAAAATA 1476159 Score = 262 bits (290), Expect = 5e-65 Identities = 613/913 (67%), Gaps = 34/913 (4%) Strand=Plus/Plus Query 39307 TTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTT 39366 ||||| ||| ||||| |||||| || || | || | |||||| ||||| || ||||| Sbjct 164167 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 164226 Query 39367 GCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttttttt 39426 |||| | ||| || ||||| ||| ||| ||||| | | || | |||| Sbjct 164227 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 164286 Query 39427 AAATCCTAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT 39483 ||||||| |||| ||| |||||||| |||||||||||||| ||| ||| | Sbjct 164287 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 164343 Query 39484 TTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT 39543 | | ||||||||||||| | | | ||||| | || || ||| | |||| | Sbjct 164344 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAAC 164403 Query 39544 GTCTACGGCCTCTGTTATTATCGATGTTAC-TACCTCATCACTCGGTGG------ATGCA 39596 ||||| || ||| ||| |||| || |||| | || | || | Sbjct 164404 TTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTA 164459 Query 39597 ATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTA 39656 ||||| || | |||||||| || || ||||| || ||||||||||| |||| Sbjct 164460 ATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTA 164516 Query 39657 ATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAG 39716 |||| ||| |||||| | || | | | | | || || | |||||| || ||| Sbjct 164517 ATTCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCAC 164576 Query 39717 CAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT 39776 |||| ||| || || || ||||| || |||| ||||||| ||| || | Sbjct 164577 AAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAA 164636 Query 39777 A---ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | | | ||||||||| ||||| || |||||| ||||| || ||||| || Sbjct 164637 ACGAATTAGTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAG 164693 Query 39834 GCATTGTTTCTATAGCATTAAAGAGA--TAATGTTT-TTCATCACTATCTTTAACATATG 39890 | || |||||||||||| ||| | | |||| ||| || || |||||||| ||| Sbjct 164694 GGATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTC---ATCTTTAATATAAT 164750 Query 39891 TATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGT 39950 |||| ||||| | |||||| |||||||||| || ||||| | || || ||||| | Sbjct 164751 TATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAAT 164810 Query 39951 AAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC-CGCCAAATTTTCA 40009 |||| | | ||||| || ||||| |||||| |||| ||| | ||||||||||| Sbjct 164811 AAAATTTTTTAGCTTCCGTTATTTGAACCTCT-CTTAAAAACTTACTAGCCAAATTTTCT 164869 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 ||||| |||||||| || ||||||||||| || ||||| || ||||||| ||| ||| Sbjct 164870 AATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCA 164929 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 | ||||||| | | || || | ||| | |||| ||| | |||||| |||||| Sbjct 164930 TTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTC 164989 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA 40189 ||||| || || || || || ||||| | | ||| | |||| ||||| ||||||| | Sbjct 164990 CAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATAT 165049 Query 40190 ATAACAAATCTAT 40202 | | ||||| || Sbjct 165050 AAAGTAAATCGAT 165062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905605874080