Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq370 226 2e-54 seq360 185 7e-42 seq359 118 8e-22 >seq370 Length=3208305 Score = 226 bits (250), Expect = 2e-54 Identities = 593/880 (67%), Gaps = 41/880 (5%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 |||||| ||||| ||| | ||| | | ||||| ||||| | || || |||||||| Sbjct 165046 TCCAATATTATATCCTGATGTTTGGGATTTTTACAAGAAAGCTGAAGCTTCTTTTTGGAC 164987 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACA 43827 |||||||||| ||||||| ||| || ||| | ||| ||| ||| || | | Sbjct 164986 AGCAGAAGAAATTGATTTATCTAGTGATTTAAAAGATT---TTGAGAAATTGAATGAAAA 164930 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 || |||||||||||| || || || |||||||| || || || || ||||| Sbjct 164929 TGAGAAACATTTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTGATGGTATAGTATT 164870 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||||||| |||| |||| ||| |||||| || | ||||| | ||||| Sbjct 164869 AGAAAATTTGGCTAGTAAGTTTTTAAGAGAGGTTCAAATAACGGAAGCTAAAAAATTTTA 164810 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 | |||||||| || |||||||||||||||| |||| || ||| | | || |||| Sbjct 164809 TTCCTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATATAGTTTATTAATTGATAA 164750 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTG 44066 || || ||||||| | || ||| | | || ||| |||| ||||||| | |||| Sbjct 164749 TTATATTAAAGATGAAAAAGA-AAGATTAAATTTATTTCATGCTATAGAAAATATCCCTG 164691 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 | | ||| |||||||| ||||| |||||||| ||| | | |||| |||| | Sbjct 164690 CCGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGATACTAATTCGTTTGCTG 164631 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTTGCG-GC 44184 || || |||| || |||| ||| ||||| || | | ||||| | | |||| | || Sbjct 164630 AAAGAATTGTTGCTAATGCATGTGTTGAAGGAATAT--TATTCAGTGGTAGTTTTTGTGC 164573 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||||| ||||||| | | | | || ||||| ||| ||||| ||||| Sbjct 164572 AATTTTTTGGTTTAAGAAACAAAATAAATTACACGGTTTGACATTTAGTAATGAATTAAT 164513 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA-TCTAGGAG 44303 ||| | |||||||| |||||| |||||| |||| ||| || ||| | || || Sbjct 164512 CAGTAGAGATGAAGGATTACATACAGATTTTAATTGC---TTAATT-TATAGTTTATTAG 164457 Query 44304 ACGATAAGCCTTCATGTAAGACAAT--TAC-AGATATTGTTGTAGAGGCAGTAAAGATAG 44360 | |||| | | || || | ||| ||| | |||| ||| ||| || ||| | | | Sbjct 164456 ATAATAAACTTCCA--GAACA-AATGGTACAAAATATCGTTAAAGAAGCTGTAGAAGTTG 164400 Query 44361 AACAAGAATTTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAA---TGAACTT 44416 || | ||||| | | ||||| ||| |||||||||||||||| | |||| Sbjct 164399 AAAGATCTTTTATATGTGAATCCTTACCATGT-GATTTAATAGGAATGAATTCTAGACTT 164341 Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGC 44473 ||| |||||||| |||| |||| ||| | ||| || ||| | || ||| Sbjct 164340 ---ATGTCTCAATATATAGAATTTGTTGCTGATAGATTA---TTAGAATGTTTAGGATGC 164287 Query 44474 GATAAACACTAT--ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 |||| | | | ||| | |||| || ||| ||| ||||| ||||| | ||| Sbjct 164286 TCTAAA-ATTTTCCATTCCA-AAAATCCATTTAATTGGATGGACTTAATTTCACTTCAAG 164229 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | ||||||||||||||||| ||| | || | ||| ||||| Sbjct 164228 GAAAAACAAACTTTTTTGAGAAAAGAGTCGCAGATTATCA 164189 >seq360 Length=1059361 Score = 185 bits (204), Expect = 7e-42 Identities = 336/489 (69%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||| | || ||| ||||||| ||||| | | ||||||| || || ||||| | |||| Sbjct 670635 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAATATG 670694 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAA 40988 || | ||||| ||||||||| ||||||||||| | | ||| || |||||| Sbjct 670695 TATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATTAAA 670754 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 ||||| || || | || | ||||| || ||||| || || | | Sbjct 670755 AATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAA 670814 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||||| || ||||||||| | |||||||||||||| |||| | |||| || | ||| Sbjct 670815 ATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATTATCA 670874 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||| |||||||||||||| |||| | || ||||| || || ||||| || || | Sbjct 670875 TGTATTATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCT 670934 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 ||| || | | || ||||||||||||| || ||||| |||||| | || | Sbjct 670935 TATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCGCAGTTCATA 670994 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 ||| |||||| ||| |||| |||| | ||||||||| || |||| | ||||| Sbjct 670995 CACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGATAGTTTAAAAATTCAACTT 671054 Query 41289 ACACGAAAACCTAGACCATTTCCAACGCTACTT--ATTAAA-CGCGCTGTTGAAAACATT 41345 | ||| ||| ||||| ||||| |||| |||||| | | | || |||| ||| Sbjct 671055 AACAGAATACCCTATCCATTCCCAAC---ACTTAAATTAAATCCAGATATTAAAAATATT 671111 Query 41346 GATGATTTT 41354 || |||||| Sbjct 671112 GAAGATTTT 671120 >seq359 Length=958772 Score = 118 bits (130), Expect = 8e-22 Identities = 326/499 (65%), Gaps = 13/499 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| | |||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct 112259 CCGAAAATAATTAATGGTCCAGAAATATTAAATAAATATGTTGGACAATCAGAAGAAAAT 112200 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || ||| ||| || || ||| ||| | |||| || | | || | || Sbjct 112199 ATTCGTAATTTATTTAAAGAAGCAGAAATGGAATATAAAC--AGAGTGGAGAGAATTCCT 112142 Query 19549 --TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA---------G 19597 || || || |||||| |||||||| | || || || |||| |||||| | Sbjct 112141 TATTACATATAATAATATTAGATGAAATTGATGCTATATGTAGACAAAGAGGAAATGTGG 112082 Query 19598 GTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACG 19657 |||| || | ||| ||| |||| | ||| || |||||| | | || ||| | || | Sbjct 112081 GTTCAAGTAGTACTGGGGTAAATGATAGTGTCGTAAATCAATTATTATCTAAAATCGATG 112022 Query 19658 GTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAG 19717 | || || | |||||||| || | ||||| ||||| |||||| | || ||||||| Sbjct 112021 GAGTAAATAGTTTAAATAATATACTATTAATTGGAATGACAAATAGAATAGATTTAATAG 111962 Query 19718 ACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATG 19777 | || || | || || || | || || || | || ||||| |||||| || Sbjct 111961 ATGAAGCTTTGCTTCGTCCTGGAAGATTTGAGTTACATATAGAAATATCCTTACCAAATA 111902 Query 19778 AATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTT 19837 || || | | |||| ||||| || |||||| || ||| || | ||| | Sbjct 111901 AAGAAGGCAGAATACAAATATTAAATATTCATACAAAAAATATGAGAATGAGTAATAAAT 111842 Query 19838 TAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAG 19897 ||| | ||||||| || || |||| | || | || |||| | || |||| Sbjct 111841 TAAGTTCCGATGTAAATATATTAGAATTAGCCGAAAGAACTCCTAACTTTTCTGGAGCAG 111782 Query 19898 AACTTGAGGGATTAGTGAG 19916 || |||| || ||||| || Sbjct 111781 AAATTGAAGGTTTAGTAAG 111763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454198033860