Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq370 100 4e-16 >seq370 Length=3208305 Score = 100 bits (110), Expect = 4e-16 Identities = 401/626 (64%), Gaps = 9/626 (1%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 || |||||||||||| ||||||| || || | ||||||| || || || |||||||| Sbjct 1474724 GTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATA 1474783 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | || | ||| | | ||| | | ||| | || | ||||| Sbjct 1474784 GGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCC 1474843 Query 110840 CAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 || || || ||| | || | | | |||||| ||||| || | | |||||| Sbjct 1474844 CAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTAATATACCTTGG 1474903 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCT 110955 || ||| || | | | | |||||| | || || | |||||||||| ||| Sbjct 1474904 CTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCAATTCAACAGA- 1474962 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 | || | | || | |||||| |||||||| || | ||||| || || || | Sbjct 1474963 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGC 1475022 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 ||| || ||| ||| || | | || |||||| ||| || | ||||||||||| | Sbjct 1475023 ATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAAT 1475082 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 ||||||||| || |||| ||||||| || || | || |||||| ||||||| Sbjct 1475083 ACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCT 1475142 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 || || | | | || |||| | |||| ||| || || ||||||| | |||| | | Sbjct 1475143 TTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATATAACTTTTTAAA 1475202 Query 111196 ATCAAAAGTGCGAGTCTCTTC--ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 || || | | | | | | || ||| | || | || || ||||||||||| Sbjct 1475203 ATTGAA--TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTA 1475260 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || ||||| ||||| | || || || | |||||| ||||||||| || Sbjct 1475261 CATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGTTACTACAT 1475320 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| || |||||||| || || || Sbjct 1475321 TTAATAGTACCCAAATTTTTCTGATT 1475346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029079651200