Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq369 102 5e-17 seq368 84.2 1e-11 >seq369 Length=2804353 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | ||| ||||||||||| ||||||||||| | || | | ||||| Sbjct 2576897 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2576956 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || ||||||||||| | ||||| || || || | ||| || || ||| || Sbjct 2576957 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCT-TG 2577015 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||||| | ||| || || ||| || || | ||| || ||||| Sbjct 2577016 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2577075 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| ||||| |||||||| ||||| || Sbjct 2577076 TCCAGTTAATGTTTTTACAAAAATTTGCATTTT 2577108 >seq368 Length=2153551 Score = 84.2 bits (92), Expect = 1e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || |||||||| | |||| | ||||| | |||||| || |||||| Sbjct 464561 TCCTTTTGAATATTGTAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAT 464502 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| | |||||||| || || | ||| || || ||| ||| ||||| ||||| | Sbjct 464501 ATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT-TGAATTTTTGCCTTAACATT 464443 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||||| ||| || || | |||||| ||||| || Sbjct 464442 CTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 464398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728173094676