Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq370 197 1e-45 >seq370 Length=3208305 Score = 197 bits (218), Expect = 1e-45 Identities = 568/862 (66%), Gaps = 15/862 (2%) Strand=Plus/Plus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314 ||||||| || || | |||| || || || || || ||||| |||| | ||||| Sbjct 164184 ATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 164243 Query 4315 TTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTAGAGCTACA 4373 ||||| ||| ||| ||||| ||| || || |||| | || || | | | Sbjct 164244 AGTCCATCCAATTAAATGGATTT-TTGGAATGGAAAATTTTAGAGCATCCTAAACATTCT 164302 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 | |||| ||||| |||||||||||||| || ||| ||| | || ||||| ||| Sbjct 164303 AATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATT 164362 Query 4434 AATCTCACA-GGTAGCGCGT---ATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT 4489 || ||||| |||| | | || | ||| | |||| || | ||| |||||| | Sbjct 164363 AAA-TCACATGGTAAGGATTCACATATAAAAGA-TCTT--TCAACTTCTACAGCTTCTTT 164418 Query 4490 GATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACA 4549 | |||| || || | | || | ||||||| |||| | | | | | ||| || Sbjct 164419 AACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCA 164478 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 |||||| ||| || ||||| ||||| || || | ||| ||| ||| || || || Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 | | | | | | || |||| |||||| || || ||| ||| || ||||| Sbjct 164539 GTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATAT 164598 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||| || ||| || || | || | ||||| | | | || ||||| Sbjct 164599 TCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAG---TATCATTAAT 164655 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||||||| |||||| ||||| || || ||| || || | | |||||| | ||| Sbjct 164656 CCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAA 164715 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 ||| || | |||| | |||| ||||||| | || |||| || ||||| |||| Sbjct 164716 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 164775 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 ||||| |||||||||| ||| || ||||| ||||| | ||||||| |||| ||| Sbjct 164776 TGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTG 164835 Query 4910 AACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 ||| || | |||| ||| ||| | || ||||| ||||||||| ||||| ||||||| Sbjct 164836 AACCTC-TCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAA 164894 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 |||| || || ||||| |||||| | | || | || | ||| | | | Sbjct 164895 AAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTT 164954 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 ||||| ||| |||||||| |||||| | |||||||| || ||||| ||||| |||| Sbjct 164955 TTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGT 165014 Query 5089 ACATAGACCAAATATCAGGATA 5110 | | | ||||| ||||||||| Sbjct 165015 AAAAATCCCAAACATCAGGATA 165036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047663863876