Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq370 571 8e-158 >seq370 Length=3208305 Score = 571 bits (632), Expect = 8e-158 Identities = 1157/1699 (68%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT---TTGTATTTTGAATGGAA 77039 || | ||||||| | | | ||| | |||||||| | | || ||| |||||| | Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAAT---A 1474591 Query 77040 CCACCATC-TGA--TAT-AATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGT 77095 | |||| ||| ||| ||||| | || || || |||| ||| || || || Sbjct 1474592 CTTCCATTGTGAGCTATTAATTGCTGT-TTCATGTCTTCATCCCATAAACCTCTGTCAAA 1474650 Query 77096 TAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGT 77155 |||| || | | | ||| |||||||| | |||||||||| || ||||| | | Sbjct 1474651 TAAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATA 1474710 Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 ||||||||||| ||||||||||| | |||||||||||||| | |||||| | |||||| Sbjct 1474711 ATAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGA 1474770 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 ||||||||||||||||| | ||||| ||||| | ||||||| | | ||||||| | Sbjct 1474771 TGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGC 1474830 Query 77276 TTTTAGATATTTCCAATCCCAA-AGATCTGA--AGGTACAACATCCCAAAGATCGTATTG 77332 ||||| | | |||||||||| | | | | | | | ||| ||| | ||| |||| Sbjct 1474831 TTTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTG 1474890 Query 77333 TAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGC 77392 || || || | || || ||| | ||| | |||||| ||||| | | || ||| Sbjct 1474891 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1474950 Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 | |||| | | ||| || || | ||||| || ||||| || || | ||||| | Sbjct 1474951 CAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA 1475010 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||| || | ||| | ||||| ||| | ||||| | |||||||||||| Sbjct 1475011 TTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCC 1475070 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 ||||| |||||||||||||| |||||||| |||| || |||| |||||| | || Sbjct 1475071 TTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGG 1475130 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||| | ||||||||||||| | |||||| || | ||| | || | Sbjct 1475131 ATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATA 1475190 Query 77633 TAGTTTAAGAAAATCAAA-------TCTTCCATCTATAACAAACATGTTCAAAGCTATAG 77685 || || ||||| || | ||||| | | ||||| | |||||||||| Sbjct 1475191 TAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATAG 1475249 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATA 77745 |||| | |||||| || || || |||| || || ||||| || || || ||||| Sbjct 1475250 ATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATA 1475309 Query 77746 GATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCT 77805 ||||||||||| ||||| |||| ||||| || ||| ||| ||| || || || | Sbjct 1475310 AGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTT 1475369 Query 77806 TATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 77865 |||| || ||| | || || ||||| || || || | |||| ||| | Sbjct 1475370 TATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAAT 1475429 Query 77866 CTCTAGCTTTTATCATAGATTTGTATCGC---CTCTCTCTTTCATATTGAGTATATAGCC 77922 || ||| | | | ||| | || | | ||| |||||||| |||||||| Sbjct 1475430 CTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATT 1475486 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||||||||| || |||||| ||| || || || ||||||||||| ||||| |||| Sbjct 1475487 TTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATG 1475546 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | || ||| ||||||| |||||||| |||||||| | ||||| |||| || Sbjct 1475547 TCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAA 1475606 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| |||||| | ||| |||||| ||||| |||||| | | ||| | ||| || | Sbjct 1475607 ATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAA 1475666 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||||| |||||||||||||| | ||| | || | ||| ||||| || | Sbjct 1475667 ATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCAC 1475726 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||||| |||||| || || | |||| ||||||| ||||| || | | ||| |||| Sbjct 1475727 CTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAG 1475786 Query 78223 ATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATAT-TACTAATGGA 78277 || ||||||| || || |||||| | || ||| | | |||| | || | | Sbjct 1475787 ATATTCCATTGGTACCTCTAATATAAGAATT----TTGTCCTCTTATATCTTGTACT-GC 1475841 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || |||||||| | ||| |||| ||| || |||| | || || | || Sbjct 1475842 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAAT 1475901 Query 78338 ACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 ||| || ||| || | ||| || ||| ||| ||||| ||||||||| | Sbjct 1475902 ACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTG 1475960 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||||| |||||| ||||| |||| |||||| ||||| |||| | ||| | || || Sbjct 1475961 GGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAAT 1476020 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | |||| |||||||| | ||| || || | | || | ||| | Sbjct 1476021 GATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTA 1476080 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 | | ||| ||||||||||||| | |||||||| || || || || ||| |||||| Sbjct 1476081 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1476140 Query 78577 AAGTTTTAAAACCAAAATA 78595 | |||||||| |||||||| Sbjct 1476141 ACGTTTTAAATCCAAAATA 1476159 Score = 217 bits (240), Expect = 2e-51 Identities = 591/885 (67%), Gaps = 40/885 (5%) Strand=Plus/Plus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 ||| | ||| ||||| ||||||||| || | || | |||||| ||||| || ||||| Sbjct 164167 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 164226 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | ||| || ||||| ||| ||||||||| | || ||||||| Sbjct 164227 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 164286 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 ||||||| |||| ||| | |||||| ||||| |||||||||||| ||| | Sbjct 164287 GCATCCTAAACATTCT--AATAA-TCTATCAGCAACAAATTCTATATATTGAGACATAAG 164343 Query 48008 TTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCG 48065 | | ||||||||||||| | | | ||||| | || | || ||| |||| || Sbjct 164344 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 164401 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTT----ACCGTTTCCTC----ACTTGGTGGAT 48117 | ||||| || ||| |||| || ||| ||| || | || | || Sbjct 164402 ACTTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATT-AT 164456 Query 48118 ACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAA 48177 || ||| || | ||||| || |||||| ||| | |||||||||||||| | Sbjct 164457 CTAATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGA 164513 Query 48178 TTAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||||||| ||| |||||| | |||| | | ||| | |||| || | |||||| || Sbjct 164514 TTAATTCATTACTAAATGTCAAACCGTGTAATTTATTTT--GTTTCTTAAACCAAAAAAT 164571 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 ||| ||| ||| || ||||| ||||| || ||| || || ||| || Sbjct 164572 TGCACAAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTC 164631 Query 48296 TCCGTAACTGGCTTCGTTGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACA 48353 | ||| | || || | ||||| | |||||| || || || ||||| Sbjct 164632 AGCA-AAC-GAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACG 164689 Query 48354 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCATTGCTATCTTTAACGT 48411 ||| || |||||||||||| || | ||| || | |||| || |||||||| | Sbjct 164690 GCAGGGATATTTTCTATAGCATGAA--ATAAATTTAATCTTTCTTTTTCATCTTTAATAT 164747 Query 48412 AAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATC 48471 || |||| ||||| | |||||| |||| || ||||||||||| | || || ||||| Sbjct 164748 AATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGG 164807 Query 48472 CGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCCAAATTC 48530 ||||| | | ||||| || || || ||||| | || ||| | | ||||||||| Sbjct 164808 AATAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCTTAAAAACTTACT-AGCCAAATTT 164866 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 || |||||| |||||||| || |||||||||||||| ||||| || ||||||| ||| Sbjct 164867 TCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTC 164926 Query 48591 TCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 48650 || || | ||| ||| | | || || | ||| | |||| ||| | |||||| ||| Sbjct 164927 TCATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCT 164986 Query 48651 GTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCA 48695 |||||||| || || || ||||| || || | || ||| | |||| Sbjct 164987 GTCCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCA 165031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665569790080