Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq370 560 2e-154 >seq370 Length=3208305 Score = 560 bits (620), Expect = 2e-154 Identities = 1147/1692 (68%), Gaps = 26/1692 (2%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 || | ||||||| | | | ||| | |||||||| | | || ||| |||||| | Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACTT 1474594 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || ||| ||||| | || || || |||| ||| || ||| || ||| Sbjct 1474595 CCATTGTGAGCTATTAATTGCTGT-TTCATGTCTTCATCCCATAAACCTCTGTCAAATAA 1474653 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | ||| |||||||||| |||||||||| || ||||||| | || Sbjct 1474654 ATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATA 1474713 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||||||| ||||||||||| | |||||||||||||| | |||||| | ||| || || Sbjct 1474714 AATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGC 1474773 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||| ||||||||||| | ||||| ||||| | ||||||| | | ||||||| |||| Sbjct 1474774 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTT 1474833 Query 75874 TAGATATTTCCAATCCCAA-AGATCTGATGG--TACAACATCCCAGAGATCGTATTGTAG 75930 || | | |||||||||| | | | || | | ||| ||| | ||| |||||| Sbjct 1474834 TAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTAA 1474893 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 || || | ||| || ||| | ||| | ||| || | || | || ||| | Sbjct 1474894 TATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCAA 1474953 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050 ||| | | ||||| ||| | ||||| || ||||| || || | ||||| | || Sbjct 1474954 TTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTC 1475013 Query 76051 TTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTG 76110 || || || | ||| | ||||| ||| | ||||||| |||||||| ||| || Sbjct 1475014 TTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTG 1475073 Query 76111 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTA 76170 ||| |||||||||||||| |||||||| |||| || ||| |||||| | || || Sbjct 1475074 AACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATA 1475133 Query 76171 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAG 76230 |||||| | ||||||||||||| | |||||| || | ||| | || | || Sbjct 1475134 ATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATATAA 1475193 Query 76231 TTTGAGAAAATCAAATT-------TTCCATCTATCACAAACATATTAAGAGCTATAGATG 76283 || ||||| |||| ||||| | | ||||| || | ||||||||||| Sbjct 1475194 CTTTTTAAAATTGAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATAGATG 1475252 Query 76284 CTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGAT 76343 | | |||||| || || || |||| || | || ||||| || || || |||| | Sbjct 1475253 CCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGT 1475312 Query 76344 TACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTAT 76403 ||||||| || ||||| || | ||||| || ||| ||| ||||| || || |||| Sbjct 1475313 TACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTTTAT 1475372 Query 76404 AAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 76463 | || | | | || ||| ||||| || || || | |||| ||| | || Sbjct 1475373 ATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTT 1475432 Query 76464 TAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACCGTT 76520 ||| | | | ||| | || | || ||| |||||||| |||||||| || Sbjct 1475433 GAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTTT 1475489 Query 76521 CAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACC 76580 ||||||| || |||||| ||| ||||| ||||||||||| |||||||| |||| || Sbjct 1475490 CAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCC 1475549 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 | | || ||| ||||| | |||||||| |||||||| | ||||| |||| ||||| Sbjct 1475550 AATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAATA 1475609 Query 76641 GATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAA 76700 |||||| | ||| |||||| ||||| |||||| | | ||||| || || | | Sbjct 1475610 AATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATA 1475669 Query 76701 TATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT 76760 |||| |||||||||||||| | ||| | || | ||| ||||| || || | Sbjct 1475670 TATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTT 1475729 Query 76761 GATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATG 76820 |||||| |||||| ||||| | |||| ||||||| ||||| || | | || |||||| Sbjct 1475730 GATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAGATA 1475789 Query 76821 TACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT-TACTAATAGATAGGCCT 76879 | ||||| || || ||||||| | | | |||| | || | | || || Sbjct 1475790 TTCCATTGGTACCTCTAATATAAGAATTTTGTCCTCTTATATCTTGTACT-GCTACACCA 1475848 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || |||||||| ||||| |||| |||||| |||| | || ||| | || || || Sbjct 1475849 ATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCA 1475908 Query 76940 ATACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 ||| ||| | ||| || ||| ||| ||||| ||||||||| | ||||| Sbjct 1475909 ATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGGGGTTCC 1475967 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 || ||||||||||||||||| |||||| || || |||| | ||| | || || ||||| Sbjct 1475968 TGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGT 1476027 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||| | | || ||||| || | ||| || || | || || | ||| || | ||| Sbjct 1476028 TTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATAAATG 1476087 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||||||| ||| | | | |||||||| || || || || ||| ||||||| ||||| Sbjct 1476088 TTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACGTTTT 1476147 Query 77179 AAAACCAAAATA 77190 ||| |||||||| Sbjct 1476148 AAATCCAAAATA 1476159 Score = 203 bits (224), Expect = 5e-47 Identities = 589/889 (66%), Gaps = 36/889 (4%) Strand=Plus/Plus Query 46320 TTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTT 46379 ||||| ||| ||||| |||||| || || | || | |||||| ||||| || ||||| Sbjct 164167 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 164226 Query 46380 GCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAttttttt 46439 |||| | ||| || ||||| ||| ||| ||||| | || ||||||| Sbjct 164227 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 164286 Query 46440 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT 46496 ||||||| |||| ||| | |||||| ||||| ||||||||||| ||| | Sbjct 164287 GCATCCTAAACATTCT--AATAA-TCTATCAGCAACAAATTCTATATATTGAGACATAAG 164343 Query 46497 TTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCA 46554 | | ||||||||||||| | | |||| | || | || ||| |||| ||| Sbjct 164344 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 164401 Query 46555 ATAGTGACAGCATCCGATATTATCGATGTT----ACTGTTTCCTCACTTGGTGGATGCAT 46610 | ||||| || ||| |||| || || ||| || || || || Sbjct 164402 ACTTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATT-AT 164456 Query 46611 CAAATGTT-TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 | ||| || | ||||| || |||||| ||| | |||||||||||||| |||| Sbjct 164457 CTAATAAACTATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTA 164516 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 |||| ||| |||||| | || | | ||| | | || || | |||||| || || Sbjct 164517 ATTCATTACTAAATGTCAAACCGTGTAATTTATTTT--GTTTCTTAAACCAAAAAATTGC 164574 Query 46728 CGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||| ||| || ||||| ||||| ||| || || |||| ||| || | Sbjct 164575 ACAAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGC 164634 Query 46788 GTA---ACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 | | | | ||||||| ||||| || ||||| || || || ||||| Sbjct 164635 AAACGAATTAGTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGC 164691 Query 46845 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATAT 46902 ||| || |||||||||||| ||| | || || | |||| | |||||||| ||| Sbjct 164692 AGGGATATTTTCTATAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAA 164749 Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962 |||| ||||| | |||||| ||||||||||||| ||||| | ||| || ||||| Sbjct 164750 TTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAA 164809 Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC-AGACAAATTCTC 47021 ||||| | | ||||| || || || |||||| | |||| | | | || |||||| || Sbjct 164810 TAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTC 164868 Query 47022 ATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC 47081 ||||| |||||||| || ||||||||||| || ||||| || ||||||| ||| || Sbjct 164869 TAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTC 164928 Query 47082 ATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 47141 || | ||| ||| | | || || | ||| | |||| ||| | |||||| ||||| Sbjct 164929 ATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGT 164988 Query 47142 CCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 ||| || || || || ||||| || || | || ||| | |||| ||||| Sbjct 164989 CCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATAT 165037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931084855040