Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq368 109 1e-18 seq369 93.3 1e-13 >seq368 Length=2153551 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| || |||||||| | ||||||||| |||||||||| ||| || Sbjct 464567 GTAGATTCCTTTTGAATATTGTAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCA 464508 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || ||||| | | |||||||| || |||||||||||| || Sbjct 464507 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 464448 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| |||| | | |||| || ||| || ||||| || |||||||| || Sbjct 464447 ACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 464398 >seq369 Length=2804353 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| || ||||| || || ||||| | ||| || || |||||||||| Sbjct 2576899 CAAG-TGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTA 2576957 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | || || || || | | |||||||| || ||||||| Sbjct 2576958 ATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAA 2577017 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| |||| | | || || ||| || ||||| ||||| ||||| | Sbjct 2577018 TTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTC 2577077 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | || || || || | |||||||| Sbjct 2577078 CAGTTAATGTTTTTACAAAAATTTGCATTTT 2577108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815300601612