Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq364 89.7 1e-12 >seq364 Length=1300438 Score = 89.7 bits (98), Expect = 1e-12 Identities = 245/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 43987 GCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCC--TCAAACAGAAAGGACTC 44044 || || ||||| || || | ||||| ||||| | ||| ||||| |||| || | Sbjct 606562 GCATCAACATCTGAATTATTTGGAAAAGTTCA--ATGTTCTATTCAAAATGAAAATACCC 606619 Query 44045 CGTTTTATCCCCGGAGT----CCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGT 44100 | |||||||| ||| || |||| | || || ||||||| ||| ||| Sbjct 606620 CATTTTATCC----AGTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACA 606675 Query 44101 AAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAA 44160 | ||||||| | || || ||| ||||| | |||| |||| || ||||| ||| Sbjct 606676 ATAAATTATAGAGAATCATATAATATGTTTTGTATTAATGGTATTTTATTTAATCATGAA 606735 Query 44161 AGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATT 44220 ||||| | ||||| | ||| || || | ||||| || | || |||| || ||| Sbjct 606736 AGTCCAAGAAGAGGAGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATTGCAAAAATT 606795 Query 44221 TTCAACGGGACAGAAAAATGCATGTATCT-AGGAAACATAGACTCTAAAAGAGATTGGGG 44279 || ||||| || ||| ||||| ||| || ||||| | | ||||||||||| Sbjct 606796 CAAAAAAAATTAGAAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATTGGGG 606854 Query 44280 ATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGA 44339 |||| |||||||||| | || |||| || |||||||||||| | | |||| || Sbjct 606855 CCATGCTAAGGATTATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGA 606914 Query 44340 CTACGTTATT 44349 | |||||| Sbjct 606915 TTTTGTTATT 606924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734210979288