Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq370 208 8e-49 >seq370 Length=3208305 Score = 208 bits (230), Expect = 8e-49 Identities = 553/830 (67%), Gaps = 35/830 (4%) Strand=Plus/Plus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 ||||||||| || | || | | | || ||||| ||||| || || | | ||| || Sbjct 164185 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 164244 Query 23277 TTCCATAAAATCAAATGGATTA---GAA--GTATTATATACAGCTTTACATGATAATTCC 23331 ||||| ||| ||||||||| ||| | | | || ||| | | | | |||| Sbjct 164245 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCAT--CCTAAACATTC- 164301 Query 23332 TTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC-ATAGTTTATACC 23390 ||| | ||||| || |||||||| ||||||||| |||| || || | | || || || Sbjct 164302 --TAATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCC 164358 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTT 23450 ||||| | ||| | | ||| ||| || | |||||| ||||| ||||| Sbjct 164359 TATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 164418 Query 23451 AATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507 || || ||| || || |||| | || | ||| | | | ||| || | ||| Sbjct 164419 AACGATATTTTGTACCATTTGTTCTGGA--AGTTTATTATCTAATAAACTATAA-ATTAA 164475 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 || |||||| ||||| |||||||| ||||| || ||||||||| |||||| || Sbjct 164476 GCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAA 164535 Query 23568 TCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGA 23626 || || ||| || | |||| |||| |||||| |||||| ||| || || | Sbjct 164536 ACCGTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATA 164594 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686 | || || |||||| ||| || |||| | | | |||| | |||| |||| Sbjct 164595 ATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGA---ATTAGTATCAT 164651 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 |||||||||| || ||| || || |||||| || |||| || || | Sbjct 164652 TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCAT 164711 Query 23747 TTAAGAGAAAAGTTT----TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | || ||| |||||| | |||| | ||||| ||||||||| ||||||| Sbjct 164712 ----GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 164767 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 || |||| |||||||||||||| | ||| || ||||| |||||| | ||||||| Sbjct 164768 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 164827 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | |||||| || | ||||| | |||| |||||||| || ||||||||||| Sbjct 164828 GTTATTTGAACCTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTT 164887 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT--AATTTTT 23980 || ||||| || || | |||| |||||||||||| | |||| || || ||||| | Sbjct 164888 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT--TTTCATTCAATTTCT 164945 Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||| || | ||| | |||||||||| ||| || ||||||||||| Sbjct 164946 CAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 164995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485575080800