Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29]
372 sequences; 24,055,504 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq369 125 2e-23
seq368 120 7e-22
>seq369
Length=2804353
Score = 125 bits (138), Expect = 2e-23
Identities = 150/203 (74%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| ||||||| || ||||| | || |||||||| || ||||| || || ||
Sbjct 2577108 AAAATGC---AAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAG 2577052
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || ||||| || || ||| ||||| || ||||||||||| |||||
Sbjct 2577051 CCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCT 2576992
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||| || | || || || |||||||| | |||||||||||||| | | |||
Sbjct 2576991 GATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGAT 2576932
Query 178095 TATAACGTCCAAAAAGAATCAAC 178117
||||| | ||||| ||||| ||
Sbjct 2576931 TATAATATTCAAAAGGAATCTAC 2576909
>seq368
Length=2153551
Score = 120 bits (132), Expect = 7e-22
Identities = 144/196 (73%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006
||||||||| || ||||| || || || || |||||||| ||||| || || |||
Sbjct 464397 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAA 464456
Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066
||||| || ||||||||||| || || ||||| ||| || | || || || ||||||||
Sbjct 464457 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 464516
Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126
| ||||||||||| ||| | | ||||| || | ||||| ||||| ||| | || |
Sbjct 464517 ATTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACTT 464576
Query 178127 TGTTTTGAGACTCAGA 178142
|| || ||| | |||
Sbjct 464577 AGTGTTAAGATTAAGA 464592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203725462716168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |