Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13 122 2e-22 seq12 87.8 4e-12 >seq13 Length=1076939 Score = 122 bits (134), Expect = 2e-22 Identities = 256/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| | | ||||||||||||||| | | ||||||||||||| | ||||| |||| Sbjct 508424 TTTATAATGCATCAACATCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAA 508483 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGT-ATGGTGTTGCAAAACTATACGCTTACTGGATT 61202 || || |||||||| ||| ||| | ||| | |||||| |||| || | | ||| Sbjct 508484 ATACACCATTTTATCCA-GTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATT 508542 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATGTTT-GTATGTAACTCGATTTGTTTCAATCA 61261 | |||||| | || || || |||||| |||| ||| |||| || ||||| Sbjct 508543 ACAATAAATTATAGAGAATCATACAATATGTTTTGTAT-TAATGGTATTTTATTTAATCA 508601 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 || ||||| | ||||| | |||||| || | |||||||| | | ||||||| Sbjct 508602 TGAAAGTCCAAGAAGAGGAGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATTGCAAA 508661 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCT-AGGAAACATAGACTCTAAAAGAGATT 61380 ||| || | |||| || ||| ||||| ||| || ||||| | | ||||||| Sbjct 508662 AATTCAAAAAAAATTAGAAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATT 508720 Query 61381 GGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAG 61440 ||||| |||| | |||||| | | ||||||| | |||||||||||| || ||| Sbjct 508721 GGGGACATGCTAAGGATTATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAG 508780 Query 61441 ATGACTACGTTATT 61454 |||| | |||||| Sbjct 508781 ATGATTTTGTTATT 508794 >seq12 Length=1150678 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 241276 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 241331 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 242489 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 242430 Query 165769 CCCC 165772 ||| Sbjct 242429 TCCC 242426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813469031510