Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 168 7e-37 >seq6 Length=3179732 Score = 168 bits (186), Expect = 7e-37 Identities = 578/882 (66%), Gaps = 33/882 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| || | ||| || || ||||| |||||||| | | || || | Sbjct 149903 TTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGT 149962 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAG---TTCCGTA 16027 |||| ||| ||| ||||| | | || ||| || |||||| | || | ||| || Sbjct 149963 CCATCCAATTAAATGGATTTTTGGAATGGAAA-ATTTTAGAGCATCCTAAACATTC--TA 150019 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTCCTAT 16086 | ||||||||| || |||||||||||||||||| |||| ||||| |||| |||||||| Sbjct 150020 A-TAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTAT 150077 Query 16087 -AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 || || | | ||| | || || ||| | ||| | | || |||||||||| Sbjct 150078 TAAATCACATGGTAAG-GATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 150136 Query 16146 TGATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 ||||| || | | | ||| | || ||| | || || | |||| || Sbjct 150137 CGATATTT-TGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAA 150195 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || ||||| |||||| ||||| ||||| | ||| || ||| || || || Sbjct 150196 TTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCG 150255 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 | | ||| | ||||||| ||||| || || ||| ||| || || ||||| Sbjct 150256 TGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATATT 150315 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG---TAGCATCTTTATTACGA 16381 || |||||| ||||| ||| | | || ||| || ||| ||| ||| ||| Sbjct 150316 CCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA------ 150369 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 |||||||| | ||||| ||||| | ||||| | || ||||||| || | | Sbjct 150370 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGA 150429 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 || || || | |||| | ||| | ||||| ||||||| | |||||| || || Sbjct 150430 AATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 150489 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 ||||| || || || |||| ||||| ||||| ||| || | ||| |||| |||| Sbjct 150490 TCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATT 150549 Query 16562 TGTACTTCCACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 || || || | ||||| | | | |||| || || || ||||| |||||||| || Sbjct 150550 TGAACCTCT-CTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGC 150608 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG--AATATGCCAA 16678 |||||| || || | ||||| || |||| ||| || | | | | ||| | ||| Sbjct 150609 AAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT----TTTCATTCAATTTCTCAA 150664 Query 16679 --TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||||||||||| | |||| ||| | |||||||| |||||||| ||| | || | Sbjct 150665 AATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTT 150724 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | || || | | ||||| |||| ||| ||| ||| ||| Sbjct 150725 TCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATA 150766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409432887640