Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 1e-12 >seq9 Length=827030 Score = 87.8 bits (96), Expect = 1e-12 Identities = 196/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || ||||| || || || ||||||||||| || || ||||||| | | | | || | Sbjct 500624 GGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAA-TATGTATGA 500682 Query 18858 -AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 || ||| | | ||||| | ||||| | ||| | | ||| || |||||||| | Sbjct 500683 TAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATTAAAAATGA 500742 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 || ||| || |||| || | | | |||||| ||| ||| | | ||||| Sbjct 500743 TCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAAATGGC 500802 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 | ||||||| ||||| | |||||||||||||| ||| | || ||||||| || Sbjct 500803 ATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATTATCATGTAT 500862 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 | || || ||||| | ||| | || || || ||||| || || |||||| Sbjct 500863 TATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGCT 500914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399500216821965