Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9 205 7e-48 >seq9 Length=827030 Score = 205 bits (226), Expect = 7e-48 Identities = 433/639 (68%), Gaps = 14/639 (2%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATG 101692 ||| |||||||||| || || || ||| | | || ||||| | | ||||||| Sbjct 501072 AATTTAAGTGTTGGGAATGGATAGGGTATTCTGTTAAGTTGAATTTTTAAACTATCAATG 501013 Query 101693 TGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTA 101752 |||| ||| | || |||| ||||| | || || |||| |||| | |||| Sbjct 501012 TGATTATTATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAATTA 500953 Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||| || |||||||| ||| |||| |||||| |||||| ||||| || |||||| Sbjct 500952 CAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCT 500893 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | ||| | |||| |||||||||||||| ||| || | || ||||| | |||||| Sbjct 500892 AGCCCTAAATCACATGATCTTTGATACATAATACATGATAATTTCCCATCGAAAACATAA 500833 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 || |||| ||| | ||||||||| || || |||||| || ||| |||||||| Sbjct 500832 AACTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCAT 500773 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTT 101992 ||||||| | || |||||| |||||| | |||| || || || | | |||| Sbjct 500772 GCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTATATTTTTT 500713 Query 101993 AATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTT--TATATTCTGCTCCGA 102050 ||||| || ||||||| || ||||| | ||| || ||||||| || |||| Sbjct 500712 AATTGATCCACTCCTTTATTTTCATAAT--TATCATACATATTTGTATATTCAGCACCGA 500655 Query 102051 AATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---TCCTTCATCTCTGTCATAAA 102107 |||| ||||| ||||| ||||| | |||||| | ||| |||| ||| || |||| Sbjct 500654 AATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTC-TCTATGAAATAAT 500596 Query 102108 AACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT--GTGCACGCCAGC 102165 | | |||||||||||| |||| ||||| || ||||| || | || | Sbjct 500595 TTTCTA--TTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTCTTAT 500538 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | | | | | || | | || |||||| |||||||| | || |||||||| || Sbjct 500537 T--TAACAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATAAT 500480 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||||| |||||| | |||| |||||||| | ||| || Sbjct 500479 TCCTCTTAAAAATAATTTCTTTGTAGTTAATAATGGGAA 500441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247779064027