Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 426 2e-114 >seq6 Length=3179732 Score = 426 bits (472), Expect = 2e-114 Identities = 1125/1700 (66%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGA 53064 || | |||||| || ||||| |||| || ||||| | | || ||| |||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 53065 TCCACCATCTACCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 |||| | | || | | || || | || || |||| |||||| ||| || | Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977 Query 53303 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 |||| ||||||| |||| | | || | | | || Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1470035 Query 53358 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1470036 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 53477 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 53534 | |||| ||| | ||| ||| ||||||| |||| | ||||| | ||||||| Sbjct 1470155 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1470212 Query 53535 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 53594 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1470213 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1470272 Query 53595 TAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACAT 53654 ||||||||||| | ||||||||||||| | ||||| ||| | |||| | | Sbjct 1470273 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1470332 Query 53655 CCTTCAGTTTGAGAAAATCAAATTGTCCATCT-----AT-TACAAACATGTTCAATGCAA 53708 | | | || ||||| |||| | | | || |||||| | || || | Sbjct 1470333 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1470392 Query 53709 TAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 53768 ||||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1470393 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1470452 Query 53769 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 53828 | | |||||||| || || || || ||||||| ||||| ||| ||||| | || Sbjct 1470453 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1470512 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 | ||||| || || |||| || ||||| || ||| || || || || ||| | Sbjct 1470513 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1470572 Query 53889 CGACACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 53945 | |||| | | | ||| | || | |||||| ||| ||| ||||| | Sbjct 1470573 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1470629 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 || |||||| || || |||||| | || || |||||||||| |||||||| | Sbjct 1470630 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||||| ||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1470809 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC--TCCAGGCCGTTTGTT 54183 | | ||||| |||||||| ||||| | || | | || ||| ||| ||||| Sbjct 1470810 CAAATATATCTGAATGCCATGGTTCAATATAAACAG-CA-AACGATCCCTTACGTTTTCC 1470867 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| Sbjct 1470868 TCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACC 1470927 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTG 54302 ||| ||| |||||||| || |||| || | | | | | |||| | || Sbjct 1470928 ATTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACTG 1470986 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 || ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | | Sbjct 1470987 CTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAA 1471046 Query 54363 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 | || || ||| ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1471047 TACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTT 1471105 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || | Sbjct 1471106 GGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAA 1471165 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 | || || || | |||| ||||| || | ||| || || | | || | |||| Sbjct 1471166 TGATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATT 1471225 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 || | || ||||||||||||| || || || || || | || || ||| ||||| Sbjct 1471226 AATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCC 1471285 Query 54602 AAAGTTTTAAAACCAAAATA 54621 || |||||||| |||||||| Sbjct 1471286 AACGTTTTAAATCCAAAATA 1471305 Score = 176 bits (194), Expect = 5e-39 Identities = 386/573 (67%), Gaps = 4/573 (1%) Strand=Plus/Plus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||| || || |||||||| |||||||| || ||| || | ||| | | | Sbjct 150208 TGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGTGTAATTTATTT 150267 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGC 24268 | || |||| |||||| || | | |||| | ||| || || |||||||| || Sbjct 150268 TGTTTCTTAAACCAAAAAATTG-CACAAAAACTACCACTGAATAATATTCCTTCAACACA 150326 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 24328 ||| |||| || |||||| || | | |||| ||||| ||| ||||| Sbjct 150327 TGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCCATTTTGCTGCCCA 150386 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 || || |||||||| ||| || | |||||||||| ||| | || | |||| Sbjct 150387 TAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATAAATTTAATCTTTC 150446 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 24448 || |||||||| ||| ||||||| || | |||||| |||| |||||||| ||||| Sbjct 150447 TTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTC 150506 Query 24449 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAA 24508 | || |||||||| || || | |||| || || || || || ||| | |||| Sbjct 150507 TACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA 150566 Query 24509 TCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 | | || || |||||||| ||||| || ||||| ||||||||||| || || |||| Sbjct 150567 -CTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACAT 150625 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 | |||||||||| ||| || | | | | ||| | |||| || | ||| |||||| Sbjct 150626 GCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATA 150685 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687 ||| | |||||| |||||||||| || || || || || || || | || ||| | | Sbjct 150686 AATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACAT 150745 Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || ||||| |||||| | | | ||||| || Sbjct 150746 CAGGATATAATATTGGATATAAAGTAAATCGAT 150778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715833478960