Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq5 122 7e-23 seq4 102 7e-17 >seq5 Length=2641308 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| || | |||||||| || || |||||||||||| || || || Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| ||||||| ||||||||||| | || ||| Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2485575 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | || ||||| || |||||||| |||||| | || | | ||||| Sbjct 2485574 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2485515 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||||||||||||| | ||| |||| Sbjct 2485514 AATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 25118 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 ||||||| ||||||||||| | || || ||||||||| | || ||||| || || Sbjct 458687 AAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAA 458746 Query 25178 ACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 |||||| |||||| | |||| | | ||||| || ||||||||||||||||| | || Sbjct 458747 ACAATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACA 458806 Query 25238 CATGGTGTTACGATTACGAGGAGG 25261 | | |||||| ||||| |||| || Sbjct 458807 CTTAGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410792909882678