Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq9 212 4e-50 >seq9 Length=827030 Score = 212 bits (234), Expect = 4e-50 Identities = 451/669 (67%), Gaps = 6/669 (1%) Strand=Plus/Minus Query 96965 TAAAATCATCAATAGATGCAATCTTTCTGGCA--AACTTTAGTGTTGGGAAAGGCCTGGG 97022 ||||||| |||||| | ||| | |||| || || ||||||||||| || ||| Sbjct 501104 TAAAATCTTCAATATTTTTAATAT--CTGGATTTAATTTAAGTGTTGGGAATGGATAGGG 501047 Query 97023 AGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCC 97082 ||| |||| || | | | | |||||||||||| ||||| || |||| ||| Sbjct 501046 TATTCTGTTAAGTTGAATTTTTAAACTATCAATGTGATTATTATAAACATGTGCATTTCC 500987 Query 97083 TAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAA 97142 |||| ||| || || | |||| |||| | ||| || || |||||| ||| || Sbjct 500986 TAAAACGTGTATGAACTGCGCAGGTTGCAAATTACAGACTTGTGCAATCATATGAGTAAA 500927 Query 97143 TAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATA 97202 | |||||| |||||| |||||||| || ||||| || | |||| |||||||||||| Sbjct 500926 AATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGCCCTAAATCACATGATCTTTGATA 500867 Query 97203 TAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGG 97262 | ||| || | || ||||| | ||||||||||||| || | |||||| || || Sbjct 500866 CATAATACATGATAATTTCCCATCGAAAACATAAAACTGACATAAAATATGACAAGGAGG 500807 Query 97263 CAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGT 97322 || ||||||| || |||| |||||||| ||||||| | ||||||||| || Sbjct 500806 TAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACACAAAAGAATTCTTCTACTTGT 500747 Query 97323 TGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATA 97382 || | | | || ||| ||||| | ||||||||||| || |||| |||| Sbjct 500746 AGGATCATTTTTAATTAAATTTATTATATTTTTTAATTGATCCACTCCTTTATTTTCATA 500687 Query 97383 ATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGG 97442 ||| | | | | | |||||| || || ||||| |||||||| || ||||||| ||| Sbjct 500686 ATTATCATACATATTTGTATATTCAGCACCGAAATGTCTCCATTGAAAACCATAAATAGG 500627 Query 97443 TCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCC 97502 ||| | || ||||||||| | | || ||||||||| | ||||| || Sbjct 500626 TCCTAAATCGTTAACTTCTCTATGAAATAATTTTCTATTATCTAAAAATTCCCTAGTACC 500567 Query 97503 ATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTC 97561 ||| || ||||| || ||| | || ||| | || | | || ||||| Sbjct 500566 ATTAGCTTCCCATATCCTTACATTCTTATTTAACAA-CGTATTACCATTTGTTTCTCCTC 500508 Query 97562 TGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGA 97621 | |||||||| | ||||||||| | || ||||| |||||| | |||| || ||||| | Sbjct 500507 TAATAAACCAAAGCAATTCTTCAATAATTCCTCTTAAAAATAATTTCTTTGTAGTTAATA 500448 Query 97622 GAGGAAAAT 97630 || |||| Sbjct 500447 ATGGGAAAT 500439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346780716063890