Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 232 1e-55 seq5 170 3e-37 seq4 161 1e-34 seq10 109 8e-19 >seq9 Length=827030 Score = 232 bits (256), Expect = 1e-55 Identities = 518/768 (67%), Gaps = 15/768 (2%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | | |||| ||||| | ||| | | | | ||| ||||||| | || | Sbjct 501075 TTTAATTTAAGTGTTGGGAATGGATAGGGTATTCTGTTAAGTTGAATTTTTAAACTATCA 501016 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || |||||| ||| | ||||||||| || | | || || || | |||| ||| Sbjct 501015 ATGTGATTATTATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAA 500956 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| || | | |||| ||||| |||||| ||||| Sbjct 500955 TTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACT 500896 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||| || | |||| ||||||||||||||| ||||| | |||| || | Sbjct 500895 CCTAGCCCTAAATCACATGATCTTTGATACATAATACATGATA---ATTTCCCATCGAAA 500839 Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| ||| || ||| || | ||||||||| |||| |||| | |||| |||| | Sbjct 500838 ACATAAAACTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTAC 500780 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| || || | || ||||| | ||| | |||||| ||| |||||| || Sbjct 500779 ATTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTAT 500720 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 || | |||||||||| | ||||| |||| |||||| || ||||| |||||| ||| Sbjct 500719 ATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATCATACATATTTGTATATTCAGC 500660 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||| ||||| | ||||||||||||||||| || |||||||| ||| ||||| | Sbjct 500659 ACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAA 500600 Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaat--atggattcct 205857 || | || | || | ||| | ||||| | ||||| || | |||| Sbjct 500599 TAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTC-- 500542 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACA 205917 |||||| | |||| ||| ||| ||| |||||||| | |||||||||| | Sbjct 500541 TTATTTAACAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATA 500482 Query 205918 ATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATAT 205977 |||||||| |||| | | ||||| || |||||||| || | | | ||| | | || Sbjct 500481 ATTCCTCTTAAAAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 500422 Query 205978 TTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTC 206035 |||||| | | || || | || | |||| || |||| || |||| |||| Sbjct 500421 TTCATAATATATCCGAATTTACTTAAAACACCTACTCCCGTTCGATCACTTTGTTTAT-- 500364 Query 206036 TTCCATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTCA 206082 ||||||| || || || || | ||| ||||||||||| |||||| Sbjct 500363 TTCCATT-CATCATAATATCATAAATAATATTTAAATATTGGTATTCA 500317 >seq5 Length=2641308 Score = 170 bits (188), Expect = 3e-37 Identities = 166/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || || | || |||| || Sbjct 2485692 AATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATC 2485633 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| || |||||||||||||||||||| || || ||||||| Sbjct 2485632 TGATACGATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAAGGAATTCCTCCTGATC 2485574 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | || ||||| |||||||||||||| ||| | | || ||| |||||||| Sbjct 2485573 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2485514 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||| ||||| ||||| || ||||| Sbjct 2485513 ATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 161 bits (178), Expect = 1e-34 Identities = 165/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAGA 124623 ||| ||||||||||| | || | || || ||| || ||| ||| |||| || | Sbjct 458630 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCA-A 458688 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 ||||||||||||||||||| || |||||||| |||||||| | || ||||||||||||| Sbjct 458689 AAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAAC 458748 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| | |||| ||| ||||||||| |||||||| ||||| || || || | Sbjct 458749 AATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACT 458808 Query 124744 TGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || ||| | ||| |||||||||| ||| || Sbjct 458809 TAGTGTTAAGATTAAGAGGTGGTATGCAAATTT 458841 >seq10 Length=1076571 Score = 109 bits (120), Expect = 8e-19 Identities = 293/448 (65%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 ||||| || | |||| | | |||| ||||| | |||||||| ||||| | | || | Sbjct 486321 TCAAAATTTCTCTTACAACTGTTATAATTCATAAACCTAATTTTTCCAAACACAGTTCGT 486380 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || ||||| | |||||| || || |||||| | ||| | ||||||||||| | Sbjct 486381 TCATTCCAACTTTGATCATGTATTCCCATAATTGAGCTCATGATTGAAACATATCCATGT 486440 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT-TC 202941 ||| | |||| ||| || | | ||||||||| | || ||| | Sbjct 486441 GGACTTTTTGCATCAATAGAAAAATCATCATTTAATTTCATGGCACATTTTAAAGCTGTT 486500 Query 202942 TTCTGGTGATTT---TGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCC 202998 ||| || || || ||| | | |||||||| |||||||||||| | | || | Sbjct 486501 TTC----GAATTGCCTGACCAGTTCAGAATTTTTTTGCACCAATACATTCTCAGAAATTC 486556 Query 202999 ATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 ||| ||| |||| | |||| | ||| || | ||||||||||| ||||| || Sbjct 486557 ATGAATTATACCTTCATTAATTAATTGCAGCTGACAACAATTCCATAAATCATCATGTGT 486616 Query 203059 TAATGCA-TTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTT 203117 | ||| |||| |||| | | ||| ||||| || || ||| |||| | |||| Sbjct 486617 TTTAGCATTTTTGAAGTCG-TCAAAATCATATAAATATTCTCTTTTATCTGAATCGTGTT 486675 Query 203118 CATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTAT 203177 |||| | | | | ||||| | || | ||||| | ||| || ||||||| ||| | Sbjct 486676 TTTTTAAAGAATCTTTAGCCCAGTCTTTTCCTCCATTAAAATTGTCATAATTTTTATTGT 486735 Query 203178 AATAACAAAAATTATCACATAGTTCTTT 203205 ||||||| ||||| ||| ||| ||||| Sbjct 486736 AATAACAGAAATTGTCAGCTAGCTCTTT 486763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448662633600