Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6 212 6e-50 >seq6 Length=3179732 Score = 212 bits (234), Expect = 6e-50 Identities = 591/889 (66%), Gaps = 51/889 (6%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| || |||||||| ||||| ||||| ||||| |||| ||||| || Sbjct 149901 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 149960 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAA 14028 ||||| ||| |||||||||| | || || | |||| || |||| |||||| Sbjct 149961 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 150020 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 14087 || ||||||| |||| || || |||||||||||||| || || | ||||||| |||| Sbjct 150021 TA---ATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTA 150076 Query 14088 TTAGTTTTACA------GGAATTATATTGGTTAAAAATTCTTT----TTCTATAGACACA 14137 ||| | ||| ||| | | || ||||| ||||| ||||| || Sbjct 150077 TTAAATC-ACATGGTAAGGATTCACATA---TAAAAGATCTTTCAACTTCTA------CA 150126 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCAT-TAGAAGGAGGATATTTTAGATGTTTAAA 14196 || || || | ||| | | |||| | | |||| ||| | | | | | | Sbjct 150127 GCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATA 150185 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 |||||| || |||||| ||| | || ||||||||||| || | ||| || ||| Sbjct 150186 AATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAA 150245 Query 14257 TGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 14315 ||| || || || || || | |||| || |||||||| |||||| || || Sbjct 150246 TGTCAAACCGTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCAC 150304 Query 14316 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14375 || |||||||| ||||| ||| || | | || ||| ||||||| || Sbjct 150305 TGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAA-----TT 150359 Query 14376 TGTTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 || || ||||||||| |||||| | ||| ||||| | | || |||| Sbjct 150360 AGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTC 150419 Query 14434 AATAGCATTAAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14491 ||||||| |||||||| | || |||| ||| | || ||| || ||||||| | | Sbjct 150420 TATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAAT 150477 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 || ||||| |||| || || || ||||| | |||||| ||||| |||||| | || Sbjct 150478 AAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTA 150537 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCG-GCCAAATTTTCATTAACTATACC 14610 ||||| | ||| |||||| ||||| ||| | ||||||||||| |||||||| Sbjct 150538 GCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACC 150596 Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC---TTCATTGCT 14667 |||||| |||||||||||||| || | | || ||||| | || ||| ||||| | Sbjct 150597 ATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCAT---T 150653 Query 14668 GAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14727 | ||| | |||| |||||| |||| | ||| | ||| || ||||||||||| Sbjct 150654 CAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGA 150713 Query 14728 AGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||| ||||||| || || | |||| | || ||||||||| ||| Sbjct 150714 AGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGA 150762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340915218360