Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 seq7 102 1e-16 seq5 86.0 9e-12 >seq9 Length=827030 Score = 118 bits (130), Expect = 1e-21 Identities = 360/551 (65%), Gaps = 38/551 (7%) Strand=Plus/Plus Query 104215 AAATTTAATTTAAGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGA 104274 |||||| ||||||| || ||| || ||| |||||||||| ||| | |||| | |||| Sbjct 500420 AAATTTGATTTAAGTCAATATTTCCCATTATTAACTACAAAGAAATTATTTTTAAGAGGA 500479 Query 104275 GTTGTAGAAGAACTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTG---TATTAAAT 104331 || | |||||| | | ||||||||||| || ||| ||| | | | |||||| Sbjct 500480 ATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGTTGTTAAAT 500539 Query 104332 CAAAAAGGAGTTAAAATTTGGAATAAAAATGCA-----GAATCGTTTTATACACAACAAA 104386 | || | | | | | |||| || | | |||| ||||| | | | ||| Sbjct 500540 AAGAATGTAAGGATA--TGGGAAGCTAATGGTACTAGGGAAT--TTTTAGATAATAGAAA 500595 Query 104387 ATCTTTT--Taaaaaa---aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATT- 104440 || ||| || | || || |||||||||||||||||||||||||| |||||||||| Sbjct 500596 ATTATTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTT 500655 Query 104441 --ATGGTGAAAATTATATTGGGTGCGATA---ATAAATATGGTGGTATAGATCAACTCAA 104495 || |||| || | | || |||| || || || || | |||||| | || Sbjct 500656 CGGTGCTGAATATACAAATATGTATGATAATTATGAAAATAAAGGAGTGGATCAATTAAA 500715 Query 104496 AAATATTATTACAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTG 104555 |||||| || | |||| ||||||| ||| ||||||||| | || | || || Sbjct 500716 AAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATG 500775 Query 104556 GAACCCAAAGGATAATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGA 104615 ||| ||| ||| | |||||||| | |||||||||||| | || || ||| | Sbjct 500776 GAATGTAAAAGATCTTGACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTA 500835 Query 104616 TGTAAGTTCAAAAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGC 104675 ||| || | |||| | |||| || ||| | | | ||||||||| Sbjct 500836 TGT---TT------TCGATGGGA------AATTATCATGTATTATGTATCAAAGATCATG 500880 Query 104676 AGATATGGGGTTGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAAT 104735 ||| | ||| | ||||| |||||||| || || |||| | | || || ||||| || Sbjct 500881 TGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGAT 500940 Query 104736 AGCTCATGTCT 104746 || || |||| Sbjct 500941 TGCACAAGTCT 500951 >seq7 Length=700602 Score = 102 bits (112), Expect = 1e-16 Identities = 162/226 (72%), Gaps = 10/226 (4%) Strand=Plus/Minus Query 188865 ATCGCTTTGATCAAACATTTTTTCATG-AAGAAATTTGGATATTCCATGTACAAGCATAC 188923 ||| |||| ||||| | | |||| | || | |||| | || |||||| | ||||| Sbjct 525558 ATCACTTTCTTCAAATAATCTTTCTTTTAACATTTTTGCAGAT-CCATGTGATATCATAC 525500 Query 188924 AATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAGTGGTT 188983 ||||| ||||||||||||| | ||||||||| || || ||| ||| || | | ||||| Sbjct 525499 AATCTCTTTCCATTTCTCCAAATCTTAAACCACCATCTCTTGATCTTCCTTCTGTTGGTT 525440 Query 188984 GCCTAGTAATTGCATGTCGTTTTTGGT-TTGTACTTGCTCTTGAAAATATTTTATCTGAT 189042 | || ||||| || | ||| |||| | |||| ||||| | |||||||||| Sbjct 525439 GTCTTGTAAT--CA--TAGTTAATGGTCCTCTACT---TCTTGCATGTATTTTATCTTCA 525387 Query 189043 ACCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAAGATTT 189088 ||||| || | ||||| || |||||| |||||||| || |||| Sbjct 525386 ACCATATGTTTTAATCTTTGATAATATGTTGGTCCAATAAATATTT 525341 >seq5 Length=2641308 Score = 86.0 bits (94), Expect = 9e-12 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||||||||| | | | ||||||||||| |||||||| || || ||| || Sbjct 1168452 ATGGAGATATTGTTTTATTTAATAGACAACCATCTTTACATCGTATGTCTATTATGTGTC 1168393 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || ||||| |||||| | ||||| ||| |||||| || || | | Sbjct 1168392 ATAAAGCAAAAATAATGGATTTTAAAACTTTTCGTTTTAATGAATGTGTTTGTTCC---C 1168336 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAA 74105 |||||||||| ||||||||||| |||||||||||| |||| |||||| |||||||| Sbjct 1168335 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCTCAAACAGAAGAA 1168277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679807797302640