Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 448 6e-121 >seq6 Length=3179732 Score = 448 bits (496), Expect = 6e-121 Identities = 1126/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Plus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62302 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 62303 TCCACCATCTACCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 |||| | | || | | || || | || || |||| |||||| ||| || | Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 ||| || | | | ||| || ||||| || ||||||||| || ||||| | | Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977 Query 62541 TTTAGATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATT 62595 |||| | ||||||| |||| | | || || || | ||| Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAG--CATTCCACATATCAAATT 1470035 Query 62596 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCA 62654 ||| ||||| | || || | || |||| ||| | ||||||||||| | | | Sbjct 1470036 GTAATATACCTTGGCTTGCTGGACT-TCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 || | || | | | ||||| ||| | ||||| || |||||||| || | ||||| Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 | |||| ||| | ||| ||||||| |||| | ||||| | || |||||| Sbjct 1470155 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1470214 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1470215 CCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACT 1470274 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | || Sbjct 1470275 GGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCA 1470334 Query 62895 T-TCAGTTTGAGAAAATCAAATCGCCCATCT----AT-TACAAACATGTTCAATGCAACA 62948 | | | ||| ||| | || || | | || |||||| | || || | | Sbjct 1470335 TATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATA 1470394 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||||| |||||| || || || |||| || | | ||||| || || ||| || Sbjct 1470395 GATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACAT 1470454 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | |||||||| || ||||| || ||||||| ||||| ||| ||||| | ||| Sbjct 1470455 AAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCT 1470514 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1470515 TTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAA 1470574 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTATAGAGTATACAAT 63185 || |||| | | | ||| | || | | |||| ||| ||| |||||| ||| Sbjct 1470575 TCTTGAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1470631 Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAAC 63245 ||| || || || |||||| | || | |||||||||| |||||||| || Sbjct 1470632 TTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 1470691 Query 63246 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| | Sbjct 1470692 GTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAA 1470751 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| ||||| || ||| ||| || ||||| |||||| | | ||| | || | Sbjct 1470752 AATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCA 1470811 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||||| |||||||| ||||| | || | || | ||| ||||| ||| Sbjct 1470812 AATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCA 1470871 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| || Sbjct 1470872 CCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTA 1470931 Query 63486 GATATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAG 63544 ||||| ||||||||||| |||| || | | | | | |||| | || || Sbjct 1470932 GATATTCCATTGGTACCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACTGCTAC 1470990 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || || Sbjct 1470991 ACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACC 1471050 Query 63605 TTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 ||| || ||| | ||| || ||| || ||||| ||||||||| | | | | Sbjct 1471051 TTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGGGG 1471109 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 |||| | |||||| || ||||||| || || ||||| |||| | ||| | || || | Sbjct 1471110 TTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGAT 1471169 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 | || || | |||| ||||| || | ||| || || | | || | |||||| | Sbjct 1471170 ATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATA 1471229 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 || ||||||||||||| |||||| || || || || || || ||| ||||||| | Sbjct 1471230 AATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACG 1471289 Query 63844 TTTTAAAACCAAAATA 63859 ||||||| |||||||| Sbjct 1471290 TTTTAAATCCAAAATA 1471305 Score = 172 bits (190), Expect = 7e-38 Identities = 279/399 (70%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 150364 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATA 150423 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 150424 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 150483 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || |||| |||||||| ||||| | || || ||||| || || | |||| || Sbjct 150484 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 150543 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACT 33991 || || || || ||| | |||| | | || || |||||||| ||||| |||||||| Sbjct 150544 GTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCACT 150602 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||||||||||| || || ||||| |||||||||| ||| || | | | | ||| | Sbjct 150603 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTC 150662 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||| || | ||| |||||| ||| | |||||| |||||||||| || || || || Sbjct 150663 AAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGC 150722 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 || || || | || ||| | ||| ||||| ||||| Sbjct 150723 TTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGG 150761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811482896560