Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 682 0.0 seq4 87.8 2e-12 >seq6 Length=3179732 Score = 682 bits (756), Expect = 0.0 Identities = 1229/1772 (69%), Gaps = 53/1772 (3%) Strand=Plus/Plus Query 36906 ATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGC 36965 ||||||| | |||||| | ||| | || | |||| || || ||| ||||| || || Sbjct 1469595 ATTATCTTT-TATATTTTAATT---TTACCT-GATCAATGAAAATACCCCTGTCTGCAGC 1469649 Query 36966 CATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATT 37025 ||| || | |||| ||||| || ||||| || ||||| || | | ||||| | Sbjct 1469650 CATATCAATAATATTCTTTTGCTTAATTTCCCATACAGTTTTGTACAACTCTTTTAAGTC 1469709 Query 37026 ATCTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACAC-AATTGTATTCTTTA 37081 |||||||| || || || ||||||| ||||| || | ||||| | || | Sbjct 1469710 ATCTGGTATTTCACTTATATATTGAATACTTCCATTGTGAGCTATTAATTGCTGT-TTCA 1469768 Query 37082 TGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 |||| | || ||| | | ||| | || ||| | || | || ||||| ||||| Sbjct 1469769 TGTCTTCATCCCATAAACCTCTGTCAAATAAATCTTTTAACAAATGGGGATTAACAACAA 1469828 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 ||| |||||| ||| |||||||| ||| ||||| |||||||||||||||| ||| | Sbjct 1469829 AAAATTCTCCACTTAAAACTCTTCTATAATAAATATTACTAGTATATGGTTCAAAGGATT 1469888 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | || ||||| || ||||||||||| ||||| ||||||| || | | Sbjct 1469889 CATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAGT 1469948 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| || |||||| || ||| | ||||| ||||| ||||||||| | || |||| Sbjct 1469949 TTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCCCAATCCCA-ATATTTGTTA 1470007 Query 37322 GGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||||| | ||||||||| |||||| ||||||| || |||||| | | | Sbjct 1470008 TCAACTTTAGCATTCCACATATCAAATTGTAATATACCTTGGCTTGCTGGACTTCCTTGA 1470067 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTAGTGCGGCA 37434 || | ||||| ||||| | ||| ||| | ||| ||| ||| ||||| || ||| Sbjct 1470068 TAAGATTCATATGGTCCATGTATTGAAGCCAATTC--AAC-AGACATTTCTAAAGCAGCA 1470124 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 ||||| || ||||| || ||| | |||| ||| |||||| | || || ||| | Sbjct 1470125 TAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGA 1470184 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 || | ||||| ||||| ||| || || || |||||||| ||||| || || |||||| Sbjct 1470185 TATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATACCAATAGGCCTATGT 1470244 Query 37555 TTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 | |||||||| | | |||| | |||||||||||||| | ||||| ||||||| | Sbjct 1470245 CTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCTTTCTATAATTTTATCT 1470304 Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT- 37673 | |||| | | ||||| |||||| ||||| | || | ||| | || || Sbjct 1470305 AAATTTCTTGTAATAATTTTGGTAATTTCATATAACTTTTTAAAATTGAATTCTTTTTTT 1470364 Query 37674 -----ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 || |||||||||| || | |||||| | | ||||||||||||||||||||| Sbjct 1470365 TCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCA 1470424 Query 37729 TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 || ||| ||||| || ||| | ||||| || |||| || |||||||| Sbjct 1470425 GGAGAGGTATATTCGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTT 1470484 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 | |||||||||||| ||||||||||||||||||||| ||||| || |||| |||| Sbjct 1470485 TTCTGATTGGATTTTGCATTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCT 1470544 Query 37849 ATTTGAGCCTCG-ATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttt- 37906 ||||| || | | | |||| ||||||| ||||| | || | ||| ||| Sbjct 1470545 ATTTG-GCTTTGTAATATAGCAAACCATAAA--TCTTG--AGCAAGAACTGTTTTTTTTC 1470599 Query 37907 -----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC 37961 ||||||| ||| |||| |||||||||| | ||| || | ||||| || Sbjct 1470600 CCATATTTTCTT--CTTCATATTTAGTATATAATTTTTCAAATTCTTCACCCCAAGTTTC 1470657 Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021 | ||| ||||||||||| ||||||||||| | ||| | || || || || || | Sbjct 1470658 ACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCT 1470717 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 | |||||| | |||||| ||||||| ||| |||||||||| | ||| ||||||| Sbjct 1470718 CTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTC 1470777 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || ||||||||||| || ||| || |||||||| | ||||||||||| || Sbjct 1470778 TTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAAT 1470837 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||||| | | | ||| | ||| | || || |||| | |||||| | || | Sbjct 1470838 ATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATC 1470897 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 |||| | | ||||||||||||||||| |||||||||| | || || |||| ||||| Sbjct 1470898 ATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTGGTACCTCTAATATA 1470957 Query 38262 AGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATTCCACCTGCATGTTTTG 38317 || | || ||| ||||| |||| | ||| || || || |||||| ||||| Sbjct 1470958 AGAATTCTGTCCTCTTATATCTTGTACT--GCTACA--CCAATACCTCCTGCA-GTTTTA 1471012 Query 38318 AT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 | |||||||| |||||||||| ||| ||||| |||||||| ||| || | || ||| Sbjct 1471013 CTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCTGCTTTCATT 1471072 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | || | |||||| ||||||||| || ||| ||||| | ||||| ||||||||| Sbjct 1471073 GATAACAAGAAACAAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGA 1471132 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 | |||||| | || |||| | |||| ||| ||||||||||| | | |||||| Sbjct 1471133 GTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGTTTCTAAAGCTTTATCTATG 1471192 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556 ||| | || ||||| | ||| || ||||||| | |||||| |||||||| || ||| Sbjct 1471193 TCATCTATATGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAATAATT 1471252 Query 38557 TTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 |||||||| | ||| || ||| ||| |||| || ||||| | |||||||||| ||| Sbjct 1471253 TTATTATTAATACGTAA-TAAATAAGATCTTTCCAACGTTTTAAATCCAAAATAATCATA 1471311 Query 38616 TGAATAATCTCTATCGTATGCTATTACATTAT 38647 | |||| ||| || ||||| | |||| Sbjct 1471312 ATTAAAATCCCTAGTATAATCTATTTCTTTAT 1471343 Score = 244 bits (270), Expect = 1e-59 Identities = 554/819 (68%), Gaps = 18/819 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || |||| | || ||||| || || || |||| ||||| || | Sbjct 149902 TTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAG 149961 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||| ||||| | || ||| | ||| || ||||| | |||| Sbjct 149962 TCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAAT 150021 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||||||||| |||||||| | | | ||||||| ||||| | | Sbjct 150022 AATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATTAAA 150081 Query 11519 TC-CACCGGAAT-AGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 || || | || | || |||| || |||| | | || || || | | | Sbjct 150082 TCACATGGTAAGGATTCACATATAAAAGATC--TTTCAACTTCTACAGCTTCTTTAACGA 150139 Query 11577 TCGACGTTATAAC--TTCCT-TAGATGGTGG--ATGTAATAAATGTTTAAACATTAAACA 11631 | | || || | || | | || | | || ||||||| || | ||||| || Sbjct 150140 T--ATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAGCA 150194 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 |||||| |||||| ||||| |||||||| |||| ||||||| |||||| || || Sbjct 150195 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 150254 Query 11692 GGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | | | | || | |||| || | |||||| || ||| ||| |||| || |||| Sbjct 150255 GTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATA 150313 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810 |||| || ||| |||| || || | |||||| || | || | | |||| Sbjct 150314 TTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCC 150373 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| ||||| ||||| ||||||||| || |||||||||| | ||||| Sbjct 150374 ATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATA 150433 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| | | ||||| | | |||| | | ||| |||| |||||||||||||| |||||| Sbjct 150434 AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTG 150493 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 ||||||||||||| | |||||||||||| ||| || | || || | || | Sbjct 150494 AATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAA 150553 Query 11991 CATCCACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | | | | ||||| ||| | || ||||| || ||| ||||||||||| | ||||||| Sbjct 150554 CCT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAA 150612 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | ||| |||||||| | ||| || | || | | ||||| || |||| | | Sbjct 150613 AATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTT 150672 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 ||||| | |||||||| | |||||| | ||||||||| Sbjct 150673 AAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 150711 >seq4 Length=1968205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 108148 TATTTATGGGGCCTATATATTATCTTAGACTTAGACATCTAACACAGGATAAGGCTACCG 108207 |||||||||| || || ||||||| | | | | |||| | ||| ||||| | Sbjct 223120 TATTTATGGGACCAATTTATTATCAAAAATTAAAACATATGGTACAAGATAAAATCCATG 223061 Query 108208 TTAGATGTAGAGGGaaaaaaaCAAA-ACTTATTCGTCAAGCTAATGAAGGTAGACGAAAA 108266 |||| |||||| | || |||| ||||| | ||| | | |||||||||| |||| Sbjct 223060 CTAGAGCTAGAGG-ACCAAGACAATTACTTACAAGACAACCAACTGAAGGTAGATCAAAA 223002 Query 108267 GGAGGTGGTATTAAGTTTGGTGAAATGGAAAGAGATTGTCTAATAGCTCATGGTG 108321 | ||| ||| | | || ||||||||||||||||||||| ||||||| |||||| Sbjct 223001 GAAGGAGGTCTCAGATTAGGTGAAATGGAAAGAGATTGTTTAATAGCATATGGTG 222947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520249452880