Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 432 5e-116 >seq6 Length=3179732 Score = 432 bits (478), Expect = 5e-116 Identities = 1124/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 65096 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 |||| | || || | | || || | || || |||| |||||| ||| || | Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977 Query 65334 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 65388 |||| ||||||| |||| | | || | | | || Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1470035 Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1470036 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 65508 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 65565 | |||| ||| | ||| ||| ||||||| |||| | ||||| | ||||||| Sbjct 1470155 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1470212 Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1470213 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1470272 Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 65685 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | | Sbjct 1470273 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1470332 Query 65686 CCT-TCAGTTTGAGAAAATCAAATCGCTCATCT----AT-TACAAACATGTTCAATGCAA 65739 | | | | ||| ||| | || || | | | || |||||| | || || | Sbjct 1470333 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1470392 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 |||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1470393 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1470452 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | |||||||| || || || || ||||||| ||||| ||| ||||| | || Sbjct 1470453 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1470512 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1470513 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1470572 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 65976 || |||| | | | ||| | || | |||||| ||| ||| ||||| | Sbjct 1470573 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1470629 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || ||| || || || |||||| | || || |||||||||| |||||||| | Sbjct 1470630 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||||||||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1470809 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | ||||| ||||||| ||||| | || | || | ||| ||||| || Sbjct 1470810 CAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTC 1470869 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||||| Sbjct 1470870 CACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCAT 1470929 Query 66277 TGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTGCACGAATATTACTAATTGAT 66335 | ||| | |||||||| || |||| || | | | | | |||| | || | Sbjct 1470930 TAGATATTCCATTGGTACCTCTAATATAAGAATTC-TGTCCTCTTATATCTTGTACTGCT 1470988 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || Sbjct 1470989 ACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATA 1471048 Query 66396 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || || ||| ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1471049 CCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGG 1471107 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || || Sbjct 1471108 GGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATG 1471167 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || || | |||| ||||| || | ||| || || | | || | |||||| Sbjct 1471168 ATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAA 1471227 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 | || ||||||||||||| || || || || || || || || ||| ||||||| Sbjct 1471228 TAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAA 1471287 Query 66635 AGTTTTAAAACCAAAATA 66652 |||||||| |||||||| Sbjct 1471288 CGTTTTAAATCCAAAATA 1471305 Score = 187 bits (206), Expect = 3e-42 Identities = 592/906 (65%), Gaps = 20/906 (2%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 ||| | ||| ||||| |||||| || || | || | ||| || ||||| || ||||| Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| | ||| || ||||| ||| |||||||| | || ||||||| Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 |||| || ||| ||| |||||||| || ||||||||||||||| ||| | Sbjct 150003 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 36082 | | ||||||||||||| | | | ||| | || |||| | || |||| ||| Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 150117 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139 | || || ||| | | ||| | ||| ||| ||| || || ||| Sbjct 150118 ACTTCTACAGCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 150177 Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||| || | || || || ||||| |||| || || |||||||| |||||| Sbjct 150178 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAAT 150234 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || ||| || | ||| | | | | || |||| |||||| || | | || Sbjct 150235 TCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTG-CACA 150293 Query 36260 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 || | ||| || || |||||||| || ||| |||| || ||| || || | Sbjct 150294 AAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAA 150353 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | | |||| ||||| ||| ||||| || || |||||||| ||| || Sbjct 150354 CGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGAT 150413 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | |||||||||| ||| | || | |||| || |||||||| ||| ||||||| Sbjct 150414 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 150473 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 || | |||||| |||| |||||||| ||||| | || |||||||| || || Sbjct 150474 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTT 150533 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 36557 | |||| || || || || || ||| | |||| | | || || |||||||| |||| Sbjct 150534 TTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTA 150592 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| ||||||||||| || || ||||| |||||||||| ||| || ||| Sbjct 150593 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCAT 150652 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | | ||| | |||| || | ||| |||||| ||| | |||||| |||||||||| | Sbjct 150653 TCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAG 150712 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || || || || || || | || ||| | ||| ||||| |||||| | | | || Sbjct 150713 AAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGTAA 150772 Query 36738 ATCTAT 36743 ||| || Sbjct 150773 ATCGAT 150778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166407496680