Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08]
777 sequences; 20,501,737 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq6 432 5e-116
>seq6
Length=3179732
Score = 432 bits (478), Expect = 5e-116
Identities = 1124/1698 (66%), Gaps = 38/1698 (2%)
Strand=Plus/Plus
Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039
||||| ||||| ||||||||||||||||| | || || ||||||| |||||||
Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680
Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095
|| | |||||| || ||||| |||| || ||||| | | || ||| |||||
Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739
Query 65096 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153
|||| | || || | | || || | || || |||| |||||| ||| || |
Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797
Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213
||| || | | | ||| |||||||| || |||||||||| || ||||| | |
Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857
Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273
||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| |||
Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917
Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333
||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| ||
Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977
Query 65334 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 65388
|||| ||||||| |||| | | || | | | ||
Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1470035
Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447
||| ||||| | || || | || |||| ||| | || |||||||| | | |
Sbjct 1470036 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094
Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507
|| | |||| | | ||||| ||| | ||||| || ||||| || || | |||||
Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154
Query 65508 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 65565
| |||| ||| | ||| ||| ||||||| |||| | ||||| | |||||||
Sbjct 1470155 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1470212
Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625
||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| |
Sbjct 1470213 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1470272
Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 65685
||||||||||| | ||||||||||||| | |||||| ||| | |||| | |
Sbjct 1470273 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1470332
Query 65686 CCT-TCAGTTTGAGAAAATCAAATCGCTCATCT----AT-TACAAACATGTTCAATGCAA 65739
| | | | ||| ||| | || || | | | || |||||| | || || |
Sbjct 1470333 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1470392
Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799
|||||||| |||||| || || || |||| || | | ||||| || || ||| |
Sbjct 1470393 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1470452
Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859
| | |||||||| || || || || ||||||| ||||| ||| ||||| | ||
Sbjct 1470453 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1470512
Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919
| ||||| || || |||| || ||||| || || || || || || ||| |
Sbjct 1470513 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1470572
Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 65976
|| |||| | | | ||| | || | |||||| ||| ||| ||||| |
Sbjct 1470573 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1470629
Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036
|| ||| || || || |||||| | || || |||||||||| |||||||| |
Sbjct 1470630 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689
Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096
| | ||| | | | || || |||| |||||||| |||||||||| ||| | |||
Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749
Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156
||||||||||| | ||| ||| || ||||| |||||| | | ||| | ||
Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1470809
Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216
| | ||||| ||||||| ||||| | || | || | ||| ||||| ||
Sbjct 1470810 CAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTC 1470869
Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276
| || ||||||| ||||| || || | |||| ||||||| ||||| || | | |||||
Sbjct 1470870 CACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCAT 1470929
Query 66277 TGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTGCACGAATATTACTAATTGAT 66335
| ||| | |||||||| || |||| || | | | | | |||| | || |
Sbjct 1470930 TAGATATTCCATTGGTACCTCTAATATAAGAATTC-TGTCCTCTTATATCTTGTACTGCT 1470988
Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395
| ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | ||
Sbjct 1470989 ACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATA 1471048
Query 66396 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454
|| || ||| ||| | ||| || ||| || ||||| ||||||||| | |
Sbjct 1471049 CCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGG 1471107
Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514
||||| | |||||| || ||||||| || || ||||| |||| | ||| | || ||
Sbjct 1471108 GGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATG 1471167
Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574
|| || || | |||| ||||| || | ||| || || | | || | ||||||
Sbjct 1471168 ATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAA 1471227
Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634
| || ||||||||||||| || || || || || || || || ||| |||||||
Sbjct 1471228 TAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAA 1471287
Query 66635 AGTTTTAAAACCAAAATA 66652
|||||||| ||||||||
Sbjct 1471288 CGTTTTAAATCCAAAATA 1471305
Score = 187 bits (206), Expect = 3e-42
Identities = 592/906 (65%), Gaps = 20/906 (2%)
Strand=Plus/Plus
Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907
||| | ||| ||||| |||||| || || | || | ||| || ||||| || |||||
Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942
Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967
|||| | ||| || ||||| ||| |||||||| | || |||||||
Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002
Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024
|||| || ||| ||| |||||||| || ||||||||||||||| ||| |
Sbjct 150003 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059
Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 36082
| | ||||||||||||| | | | ||| | || |||| | || |||| |||
Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 150117
Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139
| || || ||| | | ||| | ||| ||| ||| || || |||
Sbjct 150118 ACTTCTACAGCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 150177
Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199
||| || | || || || ||||| |||| || || |||||||| ||||||
Sbjct 150178 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAAT 150234
Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259
|| || ||| || | ||| | | | | || |||| |||||| || | | ||
Sbjct 150235 TCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTG-CACA 150293
Query 36260 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318
|| | ||| || || |||||||| || ||| |||| || ||| || || |
Sbjct 150294 AAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAA 150353
Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378
| | |||| ||||| ||| ||||| || || |||||||| ||| ||
Sbjct 150354 CGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGAT 150413
Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438
| |||||||||| ||| | || | |||| || |||||||| ||| |||||||
Sbjct 150414 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 150473
Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498
|| | |||||| |||| |||||||| ||||| | || |||||||| || ||
Sbjct 150474 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTT 150533
Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 36557
| |||| || || || || || ||| | |||| | | || || |||||||| ||||
Sbjct 150534 TTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTA 150592
Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617
| || ||||| ||||||||||| || || ||||| |||||||||| ||| || |||
Sbjct 150593 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCAT 150652
Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677
| | ||| | |||| || | ||| |||||| ||| | |||||| |||||||||| |
Sbjct 150653 TCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAG 150712
Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737
| || || || || || || | || ||| | ||| ||||| |||||| | | | ||
Sbjct 150713 AAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGTAA 150772
Query 36738 ATCTAT 36743
||| ||
Sbjct 150773 ATCGAT 150778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658166407496680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |