Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 508 8e-139 >seq6 Length=3179732 Score = 508 bits (562), Expect = 8e-139 Identities = 1143/1699 (67%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 78974 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 78975 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 |||| | || || | | || || | || ||||||| |||||| ||| || | Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||||||||| ||||||||||| | |||||||| ||||| | |||||| | ||| ||| Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCT 79212 || |||||||||||||| | ||||| ||||| | ||| | | | ||||||| || Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977 Query 79213 TTTAGAGATTCCCAATCCCAA------AGATCAGACGGGACAACATTCCAAAGATCATAT 79266 |||| |||||||||||| |||| || | ||||||| | |||| || Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCA-AC--TTTAGCATTCCACATATCAAAT 1470034 Query 79267 TGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCG 79326 |||| ||||| | || || |||| || | |||||| ||||| | || Sbjct 1470035 TGTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094 Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTG 79386 || |||||| | | ||||| || | ||||| || ||||| || || | ||||| Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 79387 AGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | |||| ||| | | | | ||| ||||||| |||| | ||||| | |||||||| Sbjct 1470155 AATTCTTTTGCAGCATCAGAT-TCATATGGATATCTTAATAACATAAATGTATCTGCTAA 1470213 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 |||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1470214 TCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGAC 1470273 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATC 79565 ||||||||||| | ||||||||||||| | ||| || || | |||| | || Sbjct 1470274 TGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTC 1470333 Query 79566 CTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAA----ACATGTT----CAACGCG 79617 | || || ||||| ||| || | | || ||| ||| || || || Sbjct 1470334 ATATAACTTTTTAAAATTGAAT--TCTTTTTTTTCCAAATCTACAAATTTACATAAAGCT 1470391 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 | |||||||| |||||| || || || |||| || | | ||||| || |||||| Sbjct 1470392 ATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAA 1470451 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 || | ||||||||| ||||| || || ||||||| ||||| ||| ||||| | | Sbjct 1470452 CATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAA 1470511 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 || ||||| || || | || || ||||| || || || || || || ||| Sbjct 1470512 TCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1470571 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATAT 79854 | || |||| | | | || | || | |||||| ||| |||| |||||| Sbjct 1470572 AAATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1470628 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 ||| ||| || || || |||||| || ||| || |||||||| | |||||||| Sbjct 1470629 AATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1470688 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 || | ||| | | || || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1470689 AATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1470748 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 ||||| ||||| | ||| || || ||||| |||||| | | ||| | || Sbjct 1470749 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAAT 1470808 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | ||||| |||||||| ||||| | || | || | |||| ||||| | Sbjct 1470809 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCT 1470868 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | |||| Sbjct 1470869 CCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCA 1470928 Query 80155 TTGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||| | |||||||| || |||| || | | | | | |||| | || Sbjct 1470929 TTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACTGC 1470987 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || Sbjct 1470988 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAAT 1471047 Query 80274 GCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 || || || ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1471048 ACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTG 1471106 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 ||||| | |||||| || ||||||| || || ||||| |||| | ||||| || || Sbjct 1471107 GGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAAT 1471166 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 || || || | |||| ||||| || | ||| || || | | || | ||||| Sbjct 1471167 GATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTA 1471226 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 | | || ||||||||||||| || || ||||| || || || |||||| |||||| Sbjct 1471227 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1471286 Query 80513 AAGTTTTAAAACCAAAATA 80531 | |||||||| |||||||| Sbjct 1471287 ACGTTTTAAATCCAAAATA 1471305 Score = 172 bits (190), Expect = 8e-38 Identities = 279/399 (70%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 150364 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATA 150423 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 150424 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 150483 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || |||| |||||||| ||||| | || || ||||| || || | |||| || Sbjct 150484 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 150543 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTCACTATTCCGTCACT 50369 || || || || ||| | |||| | | | ||| |||||||| ||||| || ||||| Sbjct 150544 GTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCACT 150602 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 ||||||||||| || || ||||| |||||||||||||| || || | | ||| | Sbjct 150603 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTC 150662 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 |||| || | ||| |||||| ||| | |||||| |||||||||| || || || || Sbjct 150663 AAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGC 150722 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 || || || | || ||| | ||| ||||| ||||| Sbjct 150723 TTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGG 150761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261823814280