Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6 228 8e-55 >seq6 Length=3179732 Score = 228 bits (252), Expect = 8e-55 Identities = 592/886 (67%), Gaps = 45/886 (5%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| || |||||||| ||||| ||||| ||||| |||| ||||| || Sbjct 149901 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 149960 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAA 13696 ||||| ||| |||||||||| | || || | |||| || |||| |||||| Sbjct 149961 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 150020 Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 13755 || |||||||||||| ||| || |||||||||||||| || || | ||||||| |||| Sbjct 150021 TA---ATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTA 150076 Query 13756 TTAGTTTTACA------GGAATTATATTGGTTAAAAATTCTTT----TTCTATAGACACA 13805 ||| | ||| ||| | | || ||||| ||||| ||||| || Sbjct 150077 TTAAATC-ACATGGTAAGGATTCACATA---TAAAAGATCTTTCAACTTCTA------CA 150126 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCAT-TAGAAGGAGGATATTTTAGATGTTTAAA 13864 || ||||| | ||| || | || | | | |||| ||| | | | | | | Sbjct 150127 GCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATA 150185 Query 13865 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13924 |||||| || |||||| ||| | || ||||||||||| || | ||| || ||| Sbjct 150186 AATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAA 150245 Query 13925 TGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983 ||| || || || || || | |||| || |||||||| |||||| ||| || Sbjct 150246 TGTCAAACCGTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCAC 150304 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 || |||||||| ||||| ||| || | | || ||| ||||||| || Sbjct 150305 TGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAA-----TT 150359 Query 14044 TGTTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 || || ||||||||| |||||| | ||| ||||| | | || |||| Sbjct 150360 AGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTC 150419 Query 14102 AATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 ||||||| |||||||| | || |||| ||| | || ||| || ||||||| | | Sbjct 150420 TATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAAT 150477 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || ||||| |||| || || || ||||| | |||||| ||||| |||||| | || Sbjct 150478 AAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTA 150537 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCG-GCCAAATTTTCATTAACTATACC 14278 ||||||| ||| || || ||||| ||| | ||||||||||| |||||||| Sbjct 150538 GCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACC 150596 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||||| |||||||||||||| || | | || ||||| | || ||| | | || | Sbjct 150597 ATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAA 150656 Query 14339 TTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||| | |||| |||||| |||| | ||| | ||| || ||||||||||| ||| Sbjct 150657 TTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGC 150716 Query 14399 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||||||| || || | |||| | || ||||||||| ||| Sbjct 150717 TTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGA 150762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723340641800