Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 219 4e-52 >seq6 Length=3179732 Score = 219 bits (242), Expect = 4e-52 Identities = 584/875 (67%), Gaps = 23/875 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| || |||||||| ||||||||||| ||||| |||| ||||| || Sbjct 149901 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 149960 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||| ||||||||| | || || | |||| || |||| | ||| Sbjct 149961 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 150020 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 13546 |||||||||||||| ||| || |||||||||||||| || || | ||||||| ||||||| Sbjct 150021 TAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTATTA 150079 Query 13547 GTTTTACAGG--AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 | ||| | || || | | || ||| | |||| | ||||| || || | Sbjct 150080 AATC-ACATGGTAAGGAT-TCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 150137 Query 13605 AATAATCTTAATAATGTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 ||| | | | || | | | |||| ||| | | | | | ||||||| || Sbjct 150138 GATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATAAATTAAGCAAT 150196 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13722 |||||| ||| | || ||||||||||| || | ||| || |||||| || || | Sbjct 150197 TAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGT 150256 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 | || || | |||| || |||||||| |||||| || || || |||||| Sbjct 150257 GTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATATT 150315 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--A 13840 || ||||| ||| || | | || ||| ||||||| || || | || | Sbjct 150316 CCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAA-----TTAGTATCATTAA 150370 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 |||||||| |||||| | ||| ||||| | | || |||| || |||| | Sbjct 150371 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 150430 Query 13901 ATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 |||||| | || |||| ||| | || ||| || ||||||| | ||| ||||| | Sbjct 150431 ATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATATGT 150488 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||| || || || ||||||| |||||| ||||| |||||| | ||||||| | Sbjct 150489 TTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTAT 150548 Query 14019 TTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| ||||| ||||| ||| || ||||| ||||| || ||||||||||| |||| Sbjct 150549 TTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTG 150607 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||||||||| || | | || ||||| | || ||| | | || | ||| | ||| Sbjct 150608 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAAT 150667 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | |||||| |||| | ||| | ||| || ||||||||||| ||| ||||||| | Sbjct 150668 CTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCT 150727 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGA 14232 | || | |||| | || ||||||||| ||| Sbjct 150728 TGTAAAAATCCCAAACATCAGGATATAATATTGGA 150762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584151706280