Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 470 2e-127 >seq6 Length=3179732 Score = 470 bits (520), Expect = 2e-127 Identities = 1124/1694 (66%), Gaps = 30/1694 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 71002 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 |||| | || || | | ||| || ||||||| |||||| ||| || ||| Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTTTCATGTCTTCATCCCATAAACCTCTGTCAAATAA 1469799 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 | || | | | ||| |||||||| || |||||||||| || ||||| | | || Sbjct 1469800 ATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATA 1469859 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 ||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||||| Sbjct 1469860 AATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGC 1469919 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 ||| ||||||||||| | |||| ||||| | ||||||| ||||||||| |||| Sbjct 1469920 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTT 1469979 Query 71298 TAGAGATTCCCAATTCCAAAGATCCGATGGTA-CAA------CNNNNNNNNNNNNNNNNN 71350 || |||||| ||| || || || || ||| | Sbjct 1469980 TAATTCATCCCAA-TCCCAATAT---TTGTTATCAACTTTAGCATTCCACATATCAAATT 1470035 Query 71351 NNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGG 71410 || || | || || |||| ||| | || |||||||| | | || | Sbjct 1470036 GTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAG 1470095 Query 71411 CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA 71470 | | |||| | | ||||| || ||||||| || ||||| || || | ||||| | Sbjct 1470096 CCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCA 1470155 Query 71471 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| ||| | ||| ||||||| |||| | ||||| | |||||||||| Sbjct 1470156 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1470215 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 ||||||| |||||||| ||||| || ||||| ||||||| ||| |||||| | | Sbjct 1470216 CTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTG 1470275 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 |||||||||| | ||||||||||||| | |||||| || | |||| | || | Sbjct 1470276 GATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCAT 1470335 Query 71651 TTAGTTTGAGAAAATCAAATCTCCCATCTATTACAA----ACACGTT----CAAGGCAAC 71702 || || ||||| || | | | | || ||| ||| || || || | Sbjct 1470336 ATAACTTTTTAAAATTGAA--TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTAT 1470393 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 |||||||| |||||| || || || |||| || | || ||||| ||||||||| || Sbjct 1470394 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1470453 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | |||||||| || || || || ||||||| ||||| ||| ||||| | ||| Sbjct 1470454 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATC 1470513 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||| || ||| | || || ||||| || || || || || || ||| | Sbjct 1470514 TTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 1470573 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 || |||| | | | || || | |||||| ||| |||| ||||||||| Sbjct 1470574 ATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTT 1470633 Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || ||||||| | ||| || ||||||||||| |||||||| |||| Sbjct 1470634 TTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGT 1470693 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| | | || || || |||| |||||||| |||||||||| ||| | ||| ||| Sbjct 1470694 CCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAA 1470753 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || ||||| | ||| || || ||||| |||||| | | ||| | || | | Sbjct 1470754 TAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAA 1470813 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||| |||||||| ||||| | || | || | |||| ||||| ||| || Sbjct 1470814 TATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCACC 1470873 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||||| ||||| || || | |||| ||||||| ||||| || | | |||||| || Sbjct 1470874 TTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAGA 1470933 Query 72243 TGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | |||||||| || |||| || | | | | | |||| | || || || Sbjct 1470934 TATTCCATTGGTACCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACTGCTACAC 1470992 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || || | Sbjct 1470993 CAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTT 1471052 Query 72362 CTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 | ||| ||| | ||| || ||| || ||||| ||||||||| | | ||| Sbjct 1471053 CAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGGGGTT 1471111 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | |||||| || ||||||| || || ||||| |||| | ||||| || || || Sbjct 1471112 CCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGATAT 1471171 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || || | |||| ||||| || | |||||| || | | || | |||||| | | Sbjct 1471172 GTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATAAA 1471231 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 || ||||||||||||| || || ||||| || || || || ||| ||||||| ||| Sbjct 1471232 TGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACGTT 1471291 Query 72601 TTAAAACCAAAATA 72614 ||||| |||||||| Sbjct 1471292 TTAAATCCAAAATA 1471305 Score = 170 bits (188), Expect = 3e-37 Identities = 371/550 (67%), Gaps = 4/550 (1%) Strand=Plus/Plus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || ||||||||||| |||||||| || ||| || | ||| | | | | || Sbjct 150214 CCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTC 150273 Query 42146 TTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 |||| |||||| || | | |||| | ||| || || |||||||| || ||| Sbjct 150274 TTAAACCAAAAAATTG-CACAAAAACTACCACTGAATAATATTCCTTCAACACATGCATT 150332 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 |||| || ||| || || | | | |||| ||||| ||| ||||| || Sbjct 150333 AGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGC 150392 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 || |||||||| ||| || ||||||| |||| ||| | || | |||| || Sbjct 150393 TTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTC 150452 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| |||| || || | |||||| ||||||||||||| ||||| | || Sbjct 150453 ATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGC 150512 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || | | || || || | || || ||| | |||| | | | Sbjct 150513 TATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTAC 150571 Query 42445 -AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 ||| |||||||| ||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 150572 TAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTA 150631 Query 42504 TAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTA 42563 |||||| ||| || | | ||||| | |||| || | ||| |||||| ||| | Sbjct 150632 TAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAA 150691 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGAT 42623 ||||||| | |||||||| || ||||| || || || || | || ||| | |||| ||| Sbjct 150692 TTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGAT 150751 Query 42624 ATTGAATTGG 42633 || ||||| Sbjct 150752 ATAATATTGG 150761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132681560520