Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 6e-12 seq6 82.4 8e-11 >seq5 Length=2641308 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| ||||| || || ||||| | || || ||||| | |||||| ||| Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2485554 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || | | ||| ||||| ||||| || |||||||| || ||||||| || Sbjct 2485555 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2485614 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| || | || || || |||| || | || || || || |||||| Sbjct 2485615 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2485674 Query 143168 TTTACGAATATTTGCAT 143184 ||||| || |||||||| Sbjct 2485675 TTTACAAAAATTTGCAT 2485691 >seq6 Length=3179732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 193/288 (67%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 157300 TTCAAAGTCATCACCATACGTATCG-TTGAGCTTAGGACACTCGTTAGGACACATTAATG 157358 |||||| || ||||| | || || || | | | ||||| || || ||||||||||||| Sbjct 1470634 TTCAAATTCTTCACCCCAAGTTTCACTTAAACCT-GGACATTCATTTGGACACATTAATG 1470692 Query 157359 ACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCA 157418 ||| | ||||||| ||| | |||||||| | ||| |||||||||| ||| | | Sbjct 1470693 TCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAA 1470752 Query 157419 TCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCA 157478 ||||| || ||| | ||||| | ||| ||| | | | ||||| || | Sbjct 1470753 ATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAA 1470812 Query 157479 TAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCAC 157535 || || ||||||| ||||||| || || || | ||| || || || |||| Sbjct 1470813 ATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCAC 1470872 Query 157536 CTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTA 157583 ||||||| || | | | ||| ||||||||||| | ||| |||| Sbjct 1470873 CTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTA 1470920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009475622640