Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq4 116 3e-21 >seq5 Length=2641308 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| || || ||||| || | || | |||||||||||||| ||| Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2485554 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || |||| || | |||||| || |||||||||||||| || |||||| ||| Sbjct 2485555 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2485614 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || || ||||| || ||||| | |||||||||||| || || | ||| Sbjct 2485615 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2485674 Query 15347 TTTACAAAAATTTGCATAT--TTGAAAATAA 15375 ||||||||||||||||| | || ||||||| Sbjct 2485675 TTTACAAAAATTTGCATTTTCTTAAAAATAA 2485705 >seq4 Length=1968205 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||| ||||| || | || || || ||||| ||||| ||||| | Sbjct 458830 CCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGAT 458771 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | |||||||||||||| || || |||| || | ||||||||| |||| Sbjct 458770 AAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGGA 458711 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 ||||||||||| || |||||| ||| ||| | || ||||| || Sbjct 458710 ATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTC 458664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175770276157