Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 >seq5 Length=2641308 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || || || || || ||||| ||||| ||||| || || | | || || Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2485542 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| ||||||||| | ||| || || | || || |||||||| || | Sbjct 2485543 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 2485602 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| | || | | |||||| || || | ||| || || || || ||| Sbjct 2485603 ATTTTTGCCT---TAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTT 2485659 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || | |||||||| ||||||||||| || Sbjct 2485660 TTTCCAGTTAATGTTTTTACAAAAATTTGCATTTT 2485694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774581275746