Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq4 102 6e-17 >seq5 Length=2641308 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| |||| || || ||||||||||||||||| ||| | |||| || Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2485542 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| |||||||| || | ||| || || |||| | |||||||||||| | Sbjct 2485543 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 2485602 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| || || | ||| ||||| | ||||| ||||| | ||||| ||||| Sbjct 2485603 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTT 2485662 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| |||||||| Sbjct 2485663 CCAGTTAATGTTTTTACAAAAATTTGCAT 2485691 >seq4 Length=1968205 Score = 102 bits (112), Expect = 6e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||||||||| || |||| || || |||||||| |||||||| Sbjct 458831 ACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGA 458772 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || |||||||||||||||||||| || | ||| ||||| | || Sbjct 458771 TAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGG 458712 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||||| || || | ||| || || | ||||| || Sbjct 458711 AATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGAC 458652 Query 44074 ATCGACCGTAATTGTTTTACC 44094 || | || || ||||| || Sbjct 458651 GTCAAGGGTTATAGTTTTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774240366996