Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 192 1e-43 seq4 159 8e-34 seq6 129 1e-24 >seq5 Length=2641308 Score = 192 bits (212), Expect = 1e-43 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| |||||||| || ||||||||||| || |||| || || || ||||||| |||| Sbjct 2485489 TGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGT 2485548 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| |||| || |||||||||||||| |||||||||||||| ||||| ||| Sbjct 2485549 TTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 2485608 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| || || || || || ||||| || || ||||| Sbjct 2485609 GCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTT 2485668 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | |||||||||||| || |||||||| Sbjct 2485669 AATGTTTTTACAAAAATTTGCATTTT 2485694 >seq4 Length=1968205 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||||||||||| || ||||| ||||| || Sbjct 458833 ATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCT 458774 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| || ||||||| ||||||||| ||||| |||| || ||||| ||||| Sbjct 458773 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGT 458714 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| ||||| || ||||| || | ||| || || || Sbjct 458713 GGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCG 458654 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 458653 ACGTCAAGGGTTATAGTTTTTCC 458631 >seq6 Length=3179732 Score = 129 bits (142), Expect = 1e-24 Identities = 382/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 268697 GATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCC 268756 ||| ||||| ||| ||||||| || |||| | ||| | ||||| | || Sbjct 150779 GATCGATTTACTTTATATCCAATATTATATCCTGATGTTTGGGATTTTTACAAGAAAGCT 150720 Query 268757 GTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAA 268815 | |||||||||||||| | ||||||| | ||| | ||| ||| |||| ||||| || Sbjct 150719 GAAGCTTCTTTTTGGACAGCAGAAGAAATTGATTTATCTAGTGATTTAAAAGATTTTGAG 150660 Query 268816 AAATTTAAA-ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 ||||| || | | ||||| | |||||| || | | || |||||||||| | Sbjct 150659 AAATTGAATGAAAATGAGAAACAT--TTTATAAAGCATGTGTTAGCATTTTTTGCAGCAA 150602 Query 268875 GTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCT 268933 |||||||||| || |||||| | | ||| ||||| | |||||| || || | Sbjct 150601 GTGATGGTATAGTATTAGAAAATTTGGCTAGT-AAGTTTTTAAGAGAGGTTCAAATAACG 150543 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 ||||| | | ||||| || || |||||| ||||||||||||||||||| | || Sbjct 150542 GAAGCTAAAAAATTTTATTCCTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATAT 150483 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 ||| ||||||| |||| |||||| | ||| | || |||| || ||||| | || Sbjct 150482 AGTTTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAATTTATTTCATGCT 150423 Query 269054 ATGAGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA 269112 || || ||| ||| || | ||| ||| | |||||| |||||||| || || Sbjct 150422 ATAGAAAATAT-CCCTGCCGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGA 150364 Query 269113 TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || | | | ||||| | |||||| ||| ||| ||||| ||||| || Sbjct 150363 TACTAATTCGTTTGCTGAAAGAATTGTTGCTAATGCATGTGTTGAAGGAATATTATTCAG 150304 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA--AAGAGGCCTTATGCCAGGATTAACT 269230 || |||| || || |||||||| ||||| || | ||| | || || || Sbjct 150303 TGGTAGTTTTTGTGCAATTTTTTGGTTTAAGAAACAAAATAAATTA--CACGGTTTGACA 150246 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || ||| ||||| || || || || ||||| ||||| Sbjct 150245 TTTAGTAATGAATTAATCAGTAGAGATGAAGGATTACA 150208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151386937469116